Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30736
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   4.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.0  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.2  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 524 SLMQLFHELKQKYPGVPDHVVSHTIELY 607
           ++  + H L+  YP VP++  S  +EL+
Sbjct: 260 NIASVLHALQLYYPHVPEYSSSIIMELH 287


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 524 SLMQLFHELKQKYPGVPDHVVSHTIELY 607
           ++  + H L+  YP VP++  S  +EL+
Sbjct: 275 NIASVLHALQLYYPHVPEYSSSIIMELH 302


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 282 YVTLLFRDFRD 314
           ++TL FRDFRD
Sbjct: 265 HLTLSFRDFRD 275


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 282 YVTLLFRDFRD 314
           ++TL FRDFRD
Sbjct: 260 HLTLSFRDFRD 270


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 136 LQYLELQVWYDNKRIK 183
           L   ++++W+ NKR K
Sbjct: 59  LNEAQIKIWFQNKRAK 74


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 516 VHAQGAGLVALSEGADIAAHPSGGSPLRPELYLSFGTSYF---NAFTGEDALPFYC*LI 349
           V A  AG+V +S GAD  A+P    PL   +  + G+  F   + +    AL  YC ++
Sbjct: 313 VQAMIAGIVVISAGAD--AYP----PLAAIVLGAIGSIVFYIISRYVFRSALEDYCNIV 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,166
Number of Sequences: 438
Number of extensions: 4519
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)