Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30736
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi...    28   7.5  
At4g23060.1 68417.m03325 calmodulin-binding family protein conta...    27   9.9  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    27   9.9  

>At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 487

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 570 TPGYFCFNS*NNCISDMLVHAQGAGLV 490
           TP  FCFNS   C+ +  V+   +GLV
Sbjct: 240 TPDLFCFNSLLTCLCERNVNRNPSGLV 266


>At4g23060.1 68417.m03325 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 543

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 548 LKQKYPGVPDHVVSHTIELYGHNKQACE 631
           +K ++    D VV+H  + YGH + +CE
Sbjct: 140 VKARFSDGFDDVVAHGSKFYGHGRDSCE 167


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 135 HSIVMLFNTLLLRIYEHLFYYN 70
           + +  LF+ LL+ +  HLFYYN
Sbjct: 290 YGVRWLFSFLLIELMTHLFYYN 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,535
Number of Sequences: 28952
Number of extensions: 299508
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)