Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30735
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 36 0.007
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 32 0.089
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.83
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 5.9
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 5.9
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 26 5.9
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 7.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +2
Query: 512 QCHNCQLYGHSSRNCHARPRCVKC-LGDHATALCARDQKTATEPPSCVLCRTQGH 673
+C+NC GH +R C C C H + C Q+ T C C T GH
Sbjct: 18 RCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT----CYACGTAGH 68
Score = 33.1 bits (72), Expect = 0.039
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 515 CHNCQLYGHSSRNCHARPRCVKC--LGDHATALCARDQKTATEPPSCVLCRTQGHPA 679
C+ C YGH +R+C +C C +G H + C + A++ C C GH A
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIG-HRSFEC----QQASDGQLCYKCNQPGHIA 169
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Frame = +2
Query: 509 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEP---PSCVLCRTQGHPA 679
S C+NC GH + C + C RD ++ P C C GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 31.9 bits (69), Expect = 0.089
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 515 CHNCQLYGHSSRNCHARPRCVKC--LGDHATALCARDQKTATEPPSCVLCRTQGHPA 679
CHNC+ GH S++C C C + DH + C +K C+ C GH A
Sbjct: 89 CHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWTKK-------CMNCGLLGHIA 137
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.7 bits (61), Expect = 0.83
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 453 PSVGSLVSLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRPSALATKKP 629
P+ S +PP SA++ + T LP +R P V + P+P ++T P
Sbjct: 1024 PTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALP 1082
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 95 VCLALKAKNINFTNARNLANGIQIKVQ--TPDDHRALSSYLRKERISFHTY--TLQEERE 262
+CL + ++N T +RN+ +Q+ + + A + + KE +F + + + E
Sbjct: 492 ICLMAELDHLNETKSRNVPATVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLE 551
Query: 263 LRVVIRGIPKELDVELVK 316
LR +R + E DVE+ K
Sbjct: 552 LREKVRAL--ECDVEIQK 567
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 374 RGREPYNMVLVALQPTPEGKKIFNTQTVCRLSGIAVEA 487
R PY ++ +P P+ + +T+CR IAV++
Sbjct: 540 RPLRPYAQIIY-FRPPPQASLVGRLRTICRNENIAVDS 576
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 518 HNCQLYGHSSRNCHARPRCVKCL 586
HN ++ G +S+ H RP + CL
Sbjct: 38 HNGEIVGGASKTKHGRPWSISCL 60
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 41 KTQTPPPVILQEKAAWDRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKE 220
K+ P + + W R+ L + + I+ NLA G+ + D ++ LR
Sbjct: 313 KSLNNPEIFGRLNEIWARITLIFEGEKISEDQRSNLAKGVVDWRKNSDQLEVITDVLRDH 372
Query: 221 RI--SFHTYTLQEE 256
++ S+ +QE+
Sbjct: 373 QVGLSYVVKLMQED 386
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 11 TPSPRPVAQNKTQTPPPVILQE 76
T P AQ+KT+TP P + E
Sbjct: 147 TKPAAPAAQSKTETPAPKVTSE 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,501
Number of Sequences: 5004
Number of extensions: 55685
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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