Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30735
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 38 0.008
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 31 0.72
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 31 0.72
At5g60700.1 68418.m07617 glycosyltransferase family protein 2 co... 31 0.95
At2g42940.1 68415.m05322 DNA-binding family protein contains a A... 31 0.95
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 31 0.95
At3g59940.1 68416.m06689 kelch repeat-containing F-box family pr... 29 2.9
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 29 3.8
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 3.8
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 3.8
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 3.8
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 29 3.8
At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putat... 28 6.7
At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative ... 28 6.7
At4g37190.1 68417.m05265 expressed protein 28 6.7
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 28 6.7
At3g04000.1 68416.m00421 short-chain dehydrogenase/reductase (SD... 28 6.7
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 27 8.8
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 27 8.8
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 27 8.8
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +2
Query: 452 TVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LGDHATALCARDQKT 628
+VC G+ + S+C NC+ GH + NC C C H C+
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 629 ATEPPSCVLCRTQGHPA 679
A + C C QGH A
Sbjct: 134 AGDLRLCNNCFKQGHLA 150
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 515 CHNCQLYGHSSRNCHARPRCVKC-LGDHATALCARDQKTATEPPSCVLCRTQGHPAN 682
C+NC+ GH +R+C C C L H A C + + C CR GH A+
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESR-------CWNCREPGHVAS 106
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 515 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCRTQGHPANY 685
C+NC GH + +C C C + ARD P C +C GH A +
Sbjct: 140 CNNCFKQGHLAADCTNDKACKNC---RTSGHIARD---CRNDPVCNICSISGHVARH 190
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 515 CHNCQLYGHSSRNCHARPRCVKC-LGDHATALCARDQKTATEPPSCV 652
C NC+ GH +R+C P C C + H C + ++ S V
Sbjct: 159 CKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGSRV 205
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +2
Query: 500 GTPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCRTQGHPA 679
G+ C C+LY H ++ C DH L + T + +C LC Q H
Sbjct: 148 GSSYSCLGCELYFHVGCIHLSKEVNHPCHSDHPLMLVESESLTDNDKKTCFLCGQQPHGI 207
Query: 680 NY 685
Y
Sbjct: 208 LY 209
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Frame = +2
Query: 515 CHNCQLYGHSSRNC-------HARPRCVKCLGD--HATALCARDQKT-ATEPPSCVLCRT 664
C C+ GHS +NC + C C GD H+ + C + T+ SC +C+
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNC-GDTGHSLSHCPYPMEDGGTKFASCFICKG 159
Query: 665 QGH 673
QGH
Sbjct: 160 QGH 162
>At5g60700.1 68418.m07617 glycosyltransferase family protein 2
contains Pfam profile PF00535: glycosyl transferase,
group 2 family protein
Length = 668
Score = 30.7 bits (66), Expect = 0.95
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 447 HRPSVGSLVSLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRPSAL 614
H PSV V+ + P +KKA L A N GT V + RA +W R +AL
Sbjct: 273 HNPSVVITVADADPNVKKA-LKMATETNSNGTALVLLPRASISKVLWMADLRSTAL 327
>At2g42940.1 68415.m05322 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 257
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -2
Query: 676 GVTLCST-QDAARRFRRGFLVASAEG--RGVIAQTLNTSGARVTVTGRVPV 533
G +C T D ARR +RG + SA G V + +SGA VT+ GR +
Sbjct: 90 GCDICETLSDFARRKQRGLCILSANGCVTNVTLRQPASSGAIVTLHGRYEI 140
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 30.7 bits (66), Expect = 0.95
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Frame = +2
Query: 119 NINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERE----LRVVIR-G 283
+IN RN+ + + P+D + +YLR ER Y ++E+E R +R
Sbjct: 196 HINLPTERNVKQNVSV----PEDLVQIQAYLRWERKGKQMYNPEKEKEEYEAARTELREE 251
Query: 284 IPKELDVELVKADLLEQGLPVNSVHRMHT-GRGREPYNMVLVALQPTPEGKKIFNTQTVC 460
+ + VE ++A LL++ S T GRE V PE KK +NT +
Sbjct: 252 MMRGASVEDLRAKLLKKDNSNESPKSNGTSSSGREEKKKV----SKQPERKKNYNTDKIQ 307
Query: 461 R 463
R
Sbjct: 308 R 308
>At3g59940.1 68416.m06689 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 418
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 604 GRGVIAQTLNTSGARVTVTGRVPVQLTVMAL--ARSAFFMGGFDSDTREPTDGLCVKDF 434
G V TL+T RV + R+P+ +A+ A +GG+D +T +P + V DF
Sbjct: 119 GLSVYNATLDT-WHRVAIPERIPLFCECVAIQDAGKVLLIGGWDPETLQPVRDVFVLDF 176
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 489 PIKKALLASAITVNCTGTLPVTVTRAPDVLS 581
P+ A + ++CT LPV+V PDVL+
Sbjct: 130 PLSSAPMIVDFDIDCTTLLPVSVPEMPDVLA 160
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +2
Query: 509 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCRTQGH 673
++C+ C GH RNC P+ ++ G ++ + PS L R++ +
Sbjct: 80 NKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSY 134
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +2
Query: 509 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCRTQGH 673
++C+ C GH RNC P+ ++ G ++ + PS L R++ +
Sbjct: 91 NKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSY 145
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +2
Query: 509 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCRTQGH 673
++C+ C GH RNC P+ ++ G ++ + PS L R++ +
Sbjct: 121 NKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSY 175
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Frame = +2
Query: 506 PSQCHNCQLYGHSSRNCH-------ARPRCVKCLGD-HATALCARDQKTATEPPS-CVLC 658
P C+ C GH +R+CH A C C + H + C + P C C
Sbjct: 33 PRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWC 92
Query: 659 RTQGHPAN 682
Q H N
Sbjct: 93 GNQDHRFN 100
>At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putative
similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
translocator, chloroplast precursor [Spinach]{Spinacia
oleracea}
Length = 549
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 5 RATPSPRPVAQNKTQTPPPVILQEKAA 85
RAT S P QNK Q PPP Q + A
Sbjct: 54 RATASSLPEEQNKPQPPPPSPPQPQGA 80
>At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 332
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 414 WRATRTILYGSLPRPVCIRC 355
W R +L SL RP+C++C
Sbjct: 283 WIDVRALLNSSLSRPICVQC 302
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 326 LEQGLPVNSVHRMHTGRGREPYNMVLVALQPTP--EGKKIFNT 448
+ + VN++ ++ TGRGR+ +L + P P GK++ NT
Sbjct: 336 VSNSMDVNTLVQLLTGRGRQNIVAILDSAMPAPTLAGKQLENT 378
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 515 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCRTQGH 673
CH+C + G H RPRC + L + + A D + P C QGH
Sbjct: 628 CHHCGVVG------HIRPRCFRLLREKNRLMNAYDVR--FHGPKCYHYGVQGH 672
>At3g04000.1 68416.m00421 short-chain dehydrogenase/reductase (SDR)
family protein similar to SP|Q08632 Short-chain type
dehydrogenase/reductase (EC 1.-.-.-) {Picea abies};
contains Pfam:PF00106 oxidoreductase, short chain
dehydrogenase/reductase family
Length = 272
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 468 LVSLSKPPIKKALLASAITVNCTGTLPVTVTRAPDVLSVWAITPRPSALATKKPRRNRLA 647
+V+ S P++ +A+AIT NC+ V ++P V+ V A PS + + R+
Sbjct: 44 VVNYSTSPVEAEKVATAITTNCSKDAEV-AGKSPRVIVVKADISEPSQVKSLFDEAERVF 102
Query: 648 ASCV 659
S V
Sbjct: 103 ESPV 106
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +2
Query: 515 CHNCQLYGHSSRNC----HARPRCVKCLG-DHATALCARDQKTATEPPSCVLCRTQGHPA 679
C++C GH+S NC R C C +H C++ C +C+ GH A
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGH-------DCYICKKTGHRA 220
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 506 PSQCHNCQLYGHSSRNC 556
P +C NC Y HS R C
Sbjct: 195 PPRCFNCGAYSHSIREC 211
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 506 PSQCHNCQLYGHSSRNC 556
P +C NC Y HS R C
Sbjct: 195 PPRCFNCGAYSHSIREC 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,108,571
Number of Sequences: 28952
Number of extensions: 326815
Number of successful extensions: 1055
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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