Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30732
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331...    31   0.93 
11_04_0212 - 14919074-14919433,14919444-14920514                       30   2.1  
03_05_0519 - 25131614-25134778                                         30   2.1  

>07_01_1132 +
           10531922-10532136,10532307-10532433,10532945-10533100,
           10533755-10533847,10534010-10534090,10534205-10534276,
           10534608-10534676,10534764-10534874,10535039-10535089
          Length = 324

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 585 QGQRGSGNEIRNKRGPQHRAARRL-RHRGFPCFH 683
           +GQRG G E R +R    RAA R+ RH G    H
Sbjct: 50  RGQRGGGEERRLRRPASQRAASRIRRHNGVNLVH 83


>11_04_0212 - 14919074-14919433,14919444-14920514
          Length = 476

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 597 GSGNEIRNKRGPQHRAARRLRHRGFPCF 680
           G G E   +R P HR    LRHR   CF
Sbjct: 343 GVGGEGEGERDPAHRQQHILRHRSVGCF 370


>03_05_0519 - 25131614-25134778
          Length = 1054

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 243 YSYIDSTKVLFIRILKVKHNALSNQNLLCALLEIFT 350
           Y  +D    LF+R+LK KH+   ++  L A L I T
Sbjct: 302 YDLVDRVPYLFVRLLKAKHHGGGDKQPLYAQLSIGT 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,665,099
Number of Sequences: 37544
Number of extensions: 269249
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)