Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30732
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical p...    28   7.8  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    28   7.8  

>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 195 NELHFFLSITFSVLFLYSYIDSTKVLFIRILKVKHNALSNQNLLCALLEIFTFRSFHIV 371
           NE+  + +  F  +   SY+      F  IL V  N+L    +L ALL    F   +I+
Sbjct: 57  NEMFIYPTAHFCQMVKVSYLVFVSACFNFILAVSVNSLQTNRVLIALLFFALFNVLYII 115


>Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical
           protein F57B1.1 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 183 VTVLNELHFFLSI--TFSVLFLYSYIDSTKVLFI-RILKVKHNALSNQNLLCALLEIFTF 353
           V +++ L+F +++  T   L    ++ S    ++  ++   HNA+   NL+ A+  +F F
Sbjct: 40  VFIMSSLNFLINVPATLFALITKEFVQSASFYYMSNVIDFCHNAILFSNLIIAIHRMFVF 99


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 225 FSVLFL-YSYIDSTKVLFIRILKVKHNALSNQNLLCALLEIFTFRSFHI 368
           FS+ FL YS I S+  + I +   K  A+   +L   LL IF+F  F I
Sbjct: 415 FSIFFLVYSCIQSSLFVGIVLWSFKSEAMFQISLNLFLLSIFSFSIFTI 463


>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
 Frame = +3

Query: 132 IIKSSFMC*KIIIRD*IVTVLNELHFFLSITFSVLFLYSYIDSTKVLFIRILKVKHNALS 311
           +  SSF   +  IR  +  +L  L FF+ + F V+ + S +D+ +     I +   +  +
Sbjct: 224 VSSSSFQRNQSAIRSLVSQMLASLMFFVPLFFFVMLIMSDMDNGQF----IGEFLQSICA 279

Query: 312 NQNLLCALLEIFT---FRSFHIVHSP 380
            Q+++ A++ IFT   +RSF ++H P
Sbjct: 280 LQSIVNAVVLIFTTPCYRSF-VLHKP 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,885,322
Number of Sequences: 27780
Number of extensions: 288277
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)