Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30732
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.55 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 644  SSPATSQRVPMFPPAWNCRIVS 709
            SSPAT+  +   PPA++C  VS
Sbjct: 1257 SSPATALMLQHAPPAYSCGTVS 1278


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 346 KISRSAHSRFWFDNALCFTFKIRINKTLVLSIYEYKNKTENVIERKKCNS 197
           K+S    S  WF     F F   +    V +IY  K KT   +  KK NS
Sbjct: 287 KVSYIKASEIWFLGCTIFLFAAMVEFAFVNTIYRRK-KT---VPLKKVNS 332


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 629 ATFIADFITASSLPL 585
           A F  DFIT ++LPL
Sbjct: 176 AIFDGDFITENNLPL 190


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 650 PATSQRVPMFPPAWNC 697
           PATS  VP+    +NC
Sbjct: 285 PATSDAVPLLGTYFNC 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,206
Number of Sequences: 438
Number of extensions: 4179
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)