Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30729
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    29   0.51 
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   4.7  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   4.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.3  

>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +2

Query: 521 VSDVENFPNEYHNCNYSFSINDLLCFPSVWNNIRLDGLQSRKDPKQTRREHE 676
           VS +E  P+EY    Y  SIND+    +V   I  D   + KDPK++    E
Sbjct: 275 VSSMEYAPSEYGPSEYGPSINDITNMSAV---IYPDSFLAPKDPKKSFSSEE 323


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 639 AEKILNRQEESMNEEPFHL 695
           AE +L +++ S+N +PFHL
Sbjct: 354 AEMLLGKEKTSINTDPFHL 372


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +3

Query: 360 VHILLLISTSERKYRMYCL*KKLIWSYYL*NIVFF*IYLKYCIEKHYSIYYLTLCQMLKI 539
           V +LLLI+     +  + L     + +Y+ N +F   +LKY     Y I Y     + K+
Sbjct: 301 VSVLLLIAHFNTIFHPFILADNRHYLFYVFNRLFRIWWLKYLGPFSYLILYYFFLDISKL 360

Query: 540 FLMNIITVIILSASMTCFV 596
            + ++   +++S ++   V
Sbjct: 361 QMTSLTFFLLISTTILTLV 379


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 552  YSLGKFSTSDTRSNNICYSVFLYNILNRSKKKLC 451
            YSL   +   TRS+NI  S+    + N  KKK+C
Sbjct: 2386 YSLLDQTKLFTRSSNITESLSFKELCNYLKKKIC 2419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,073
Number of Sequences: 5004
Number of extensions: 57781
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)