Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30729
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0472 - 3346195-3346310,3346587-3346878                           30   2.1  
02_05_0266 + 27280592-27281668                                         29   3.7  
02_04_0002 - 18825310-18825873                                         28   8.6  
02_02_0248 - 8267332-8268276,8268338-8269288                           28   8.6  

>06_01_0472 - 3346195-3346310,3346587-3346878
          Length = 135

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 650 PKQTRREHERGTVSLER-HNALQIR 721
           P +TRR  ERG +SL R H+A QIR
Sbjct: 29  PGETRRNTERGAMSLTRWHDAAQIR 53


>02_05_0266 + 27280592-27281668
          Length = 358

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 552 YSLGKFSTSDTRSNNICYSVFLYNILNRSKKKL 454
           YS+     +D RS  + YSV ++++ +RS KKL
Sbjct: 300 YSVTTKEVNDRRSTTVKYSVSVFSLEHRSSKKL 332


>02_04_0002 - 18825310-18825873
          Length = 187

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 627 MDYRAEKILNRQEESMNEEPFHLKDIMHFRS 719
           +DYRAE+ +N   E +  + FH   ++  RS
Sbjct: 156 VDYRAEEFINMFYEQLRAQSFHPPTVLQCRS 186


>02_02_0248 - 8267332-8268276,8268338-8269288
          Length = 631

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 360 VHILLLISTSERKYRMYCL*KKLIWSYYL 446
           + + LL+S + RKYR+  L +  IW  YL
Sbjct: 20  LQLFLLVSATFRKYRVPALLRSCIWLAYL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,191,814
Number of Sequences: 37544
Number of extensions: 283641
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)