Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30729
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine rece...    29   3.4  
Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 1 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 336 NKCIILFSVHILLLISTSERKYRMY 410
           N C++L+S  +L++I  S ++YRMY
Sbjct: 271 NCCVLLYSFLMLIIIIFSVKQYRMY 295


>Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical
           protein F54F7.4 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 453 IVFF*IYLKYCIEKHYSI-YYLTLCQMLKIFLMNIITVIILSASMTCFVSLLC 608
           +V+F I  K    + YS+ + L LCQ    +L+ ++  I+    M  ++ L+C
Sbjct: 19  VVYFFIVWKTVFTEFYSMTHILHLCQCCVSYLVILVASILFVFKMQVWILLVC 71


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -1

Query: 296 ISMANNNYMCNSFFTCLNHAIGQMIFVFATFFNALIL---HEL*LLHFSDTTSFNTKNVQ 126
           I + +N Y+ N+    L HAI       A + N L+    +E  +   +  T+    N Q
Sbjct: 423 ILIRSNKYLKNAILASLEHAISTSSTPVALYDNPLLFQNNYECLMFRITYLTNVQVDNRQ 482

Query: 125 CG 120
           CG
Sbjct: 483 CG 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,703
Number of Sequences: 27780
Number of extensions: 312920
Number of successful extensions: 784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)