Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30729
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   2.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   3.9  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 158 DTTSFNTKNVQCGHIKRSYL 99
           D   FN KNV    ++R Y+
Sbjct: 249 DNVGFNVKNVSVKELRRGYV 268


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 158 DTTSFNTKNVQCGHIKRSYL 99
           D   FN KNV    ++R Y+
Sbjct: 306 DNVGFNVKNVSVKELRRGYV 325


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 158 DTTSFNTKNVQCGHIKRSYL 99
           D   FN KN+    ++R Y+
Sbjct: 306 DNVGFNVKNISVKELRRGYV 325


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 158 DTTSFNTKNVQCGHIKRSYL 99
           D   FN KN+    ++R Y+
Sbjct: 17  DNVGFNVKNISVKELRRGYV 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,327
Number of Sequences: 438
Number of extensions: 4176
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)