Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30729
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26810.1 68417.m03861 SWIB complex BAF60b domain-containing p...    29   4.1  
At4g23740.1 68417.m03415 leucine-rich repeat transmembrane prote...    28   5.5  
At4g13060.1 68417.m02037 F-box family protein-related contains T...    27   9.5  

>At4g26810.1 68417.m03861 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 106

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 527 DVENFPNEYHNCNYSFSINDLLCFPSVWNNIRLDGLQSRKD 649
           D+ N P+   N      I+ L CF  VW+ I+ + LQ  K+
Sbjct: 22  DLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKN 62


>At4g23740.1 68417.m03415 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase -
           Arabidopsis thaliana RKL1, PID:g4008006
          Length = 638

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 521 VSDVENFPNEYHNCNYSFSINDLL 592
           + DV N  + +  CNYSF + DLL
Sbjct: 313 MEDVNNRLSFFEGCNYSFDLEDLL 336


>At4g13060.1 68417.m02037 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 335

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 476 KILYRKTL*HILFDLVSDVENFPN-----EYHNCNYSFSINDLLCF 598
           ++LY  +  H  F   SDV NF N     + H  NYS S+N L+ F
Sbjct: 9   QVLYMLSF-HENFKSYSDVNNFHNMPPTEDCHYYNYSASVNGLVTF 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,129,822
Number of Sequences: 28952
Number of extensions: 264795
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)