Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30726
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    43   5e-05
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    42   7e-05
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    38   0.002
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    38   0.002
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    31   0.23 
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    30   0.30 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.6  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    28   1.6  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    27   2.8  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   6.5  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   8.6  

>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 25/63 (39%), Positives = 33/63 (52%)
 Frame = +3

Query: 339 DYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAA 518
           D  G VV HGTD+       L   + T  K +V+ GA  P     +DG  NLL AV++AA
Sbjct: 119 DVHGIVVTHGTDSLEETAMFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAA 177

Query: 519 TQR 527
           + R
Sbjct: 178 SNR 180


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 25/63 (39%), Positives = 33/63 (52%)
 Frame = +3

Query: 339 DYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAA 518
           D  G VV HGTD+       L   + T  K +V+ GA  P     +DG  NLL AV++AA
Sbjct: 119 DVHGIVVTHGTDSLEETAIFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAA 177

Query: 519 TQR 527
           + R
Sbjct: 178 SNR 180


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +3

Query: 276 SSDFTIDDWIKMARDI--KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGA 449
           S + T  D +K+A+ I  +    +  G V+ HGTD+       L   + T  K +V+ GA
Sbjct: 93  SENLTPADVLKLAKLILAEVAKPNVHGIVITHGTDSLEETAMFLDLTISTA-KPIVVVGA 151

Query: 450 QVPIFQPRSDGNNNLLCAVLIAATQR 527
             P     +DG  NLL AV +A++ +
Sbjct: 152 MRPSTAIGADGPMNLLNAVAVASSNQ 177


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +3

Query: 276 SSDFTIDDWIKMARDI--KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGA 449
           S + T  D +K+A+ I  +    +  G V+ HGTD+       L   + T  K +V+ GA
Sbjct: 93  SENLTPADVLKLAKLILAEVAKPNVHGIVITHGTDSLEETAMFLDLTISTA-KPIVVVGA 151

Query: 450 QVPIFQPRSDGNNNLLCAVLIAATQR 527
             P     +DG  NLL AV +A++ +
Sbjct: 152 MRPSTAIGADGPMNLLNAVAVASSNQ 177


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 713 CIHWELILEDVSTSSDQPLKWSSLPTTEESSGC 615
           C HWE +   ++ ++D+ LK + +   EE   C
Sbjct: 212 CFHWEAVWSSITRNTDERLKMAQVNCDEEKEMC 244


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +3

Query: 78  KNEKGVLVPQKDIESVIRRLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDDKILYHIYE 257
           K E G+ +    ++  + +L +L + A+W  NL+ TDK   +         D I    + 
Sbjct: 643 KYELGIAISGYALDKNVGKLVELINKAFWNTNLSNTDKLAIMLKTSVSGITDGIAEKGHS 702

Query: 258 YDELKDSSDFT 290
           + ++  +S  T
Sbjct: 703 FAKVSSASGLT 713


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 467 TSKRW*QQFVMRCADSGHSTHTRSNSVLWSKTL*GN*SKKVSNTRIYAFDTPNF 628
           +SK W +   +    S  S+HT S S L    + G   K  S++ +Y  DT  F
Sbjct: 327 SSKHWYKLSDLPFTPSPRSSHTLSCSGLTLVLIGGKQGKGASDSNVYMLDTSRF 380


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 560 FCSKEHCYFWYALSG 516
           FC KE+CYF +A +G
Sbjct: 511 FCPKENCYFMFACAG 525


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/54 (18%), Positives = 31/54 (57%)
 Frame = +3

Query: 201 LALPDGKDTDDKILYHIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVL 362
           LA   G+ T + + +H+++  +  + +++ +++ I   +++ +   DY  +V+L
Sbjct: 18  LAAVHGETTSNSVTFHVFQQLDSTNLTNYQLENVITQVKELDKGPKDYLYWVIL 71


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 90  GVLVPQKDIESVIRRLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDDKILYHIYEYDEL 269
           G+   Q     ++  L  LH D +  NN     K++++ L D  +   +I+   Y YD +
Sbjct: 444 GMFSSQDQCYILVFSLMMLHTDVFNSNNKHKMTKQEFINLCDIDELAPEIME--YYYDNI 501

Query: 270 KDSSDFTIDD 299
             +    +DD
Sbjct: 502 TFTPFVNLDD 511


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 90  GVLVPQKDIESVIR-RLPQLHDDAYWKNNLAGTDK--KDYLALPDGKDTDDKILYHIYEY 260
           G+  P K+++S     L +L+  + WKNNLA  D    +++ L   +    + + HI   
Sbjct: 179 GLEEPPKELQSHQSVELYRLYQTSLWKNNLADFDDLLLNFILLLQKQPDCVRNIKHIL-I 237

Query: 261 DELKDSS 281
           DE +D+S
Sbjct: 238 DEFQDTS 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,720
Number of Sequences: 5004
Number of extensions: 78407
Number of successful extensions: 237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)