Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30726
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 32 0.55
07_01_0921 + 7753744-7753821,7753921-7754856,7755285-7755377,775... 31 0.97
11_06_0050 + 19631164-19631987,19632103-19634023 30 2.2
10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579... 30 2.2
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 2.9
07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415... 29 5.2
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026 28 9.0
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 28 9.0
01_06_1155 - 34957402-34957824 28 9.0
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 31.9 bits (69), Expect = 0.55
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -3
Query: 557 CSKEHCYFWYALSGRYQHSA*QIVVTIASRLKYWNLSTSEYNSLSD-GFQHERQDRTTVR 381
C E ++ GR A V + R K N TS ++++ QH +Q+ + +R
Sbjct: 167 CDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLR 226
Query: 380 SCVGAVQNHESIVVMVKSLN 321
+ ++QN S ++ S+N
Sbjct: 227 QQISSLQNANSRTIVGDSIN 246
>07_01_0921 +
7753744-7753821,7753921-7754856,7755285-7755377,
7755462-7755815
Length = 486
Score = 31.1 bits (67), Expect = 0.97
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 225 TDDKILYHIYEYDELKDSSDFTIDDWIKMARDIKRFYH 338
+DD + H++ KDS+ D+W+ R +R+ H
Sbjct: 431 SDDDLSAHVHHPSPPKDSNSDIFDEWVYSGRGFERYLH 468
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 72 MLKNEKGVLVPQKDIESVIRRLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDDKILYH 248
+ KN ++ +K + ++ RL ++HDD K NL + L GK T ++YH
Sbjct: 158 LYKNVSELVGTKKKTDDLVSRLMEMHDDVESKRNLKVVSIVGFGGL--GKTTLASVVYH 214
>10_02_0143 +
5795028-5795108,5795197-5795403,5795878-5795976,
5796136-5796224,5797876-5797992,5798262-5798367,
5798522-5798606,5798699-5798808,5799335-5799465,
5799686-5799782,5800310-5800603
Length = 471
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -3
Query: 698 LILEDVSTSSDQPLKWSSLPTTEESSGCRMRKYACSILFYSSSPK 564
L++ +S SSD+ L +S +PT SG ACS+L + +PK
Sbjct: 30 LVVGKLSASSDRALAYSLIPTPPTDSGAP----ACSLLRAAPNPK 70
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 29.5 bits (63), Expect = 2.9
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Frame = +3
Query: 129 RRLPQLHDDAYWKNNLAGTDKKDYLALPDGKD-TDDKILYHIYEYDELK----------D 275
RR+ + DD YW+ GT L LP D + I++Y+E K
Sbjct: 302 RRIIRSDDDCYWQWEPCGTVDSASLLLPAADSCVPDCLFPEIFDYEERKLALNNVLSSFP 361
Query: 276 SSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGG 392
+ D DD + M IK D DG+++ T++ G
Sbjct: 362 TLDLYRDDVVYMMTKIKD--DDPDGWIIAVNTESKRLEG 398
>07_03_1405 +
26340645-26340921,26341003-26341226,26341315-26341562,
26341622-26342051,26342630-26343049
Length = 532
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 378 TAYGGSVLSFMLETVGKTVVLTGAQVPIFQP-RSDGNNNLLCAVLIAAT 521
T GG++L+F + T+ + + GA +F P R DG + +L +T
Sbjct: 425 TVPGGTMLTFPIATMHRDEEVWGADAGVFDPMRFDGGGGAMAKLLSFST 473
>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
Length = 453
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 671 KMLIHPPGSVPNECRLHDQL 730
K +HP G P+ CRL D L
Sbjct: 311 KFCLHPAGDTPSACRLFDAL 330
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -3
Query: 449 STSEYNSLSDGFQHERQDRTTVRSCVGAVQNH--ESIVVMVKSLNISRHFYPIVYREIRR 276
S E +L+D + Q + + S ++++H E +V+++K + H P V +R
Sbjct: 673 SCGEPQALADHVLNAWQRSSIINSIDPSLEDHVAEEVVLVLKLGLLCSHSSPKVRPSMRL 732
Query: 275 IFEFIVFVNMVQNFIIRVFSI 213
+ +++ +Q+F FSI
Sbjct: 733 VMQYLEREATLQDFAFSFFSI 753
>01_06_1155 - 34957402-34957824
Length = 140
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 668 PKMLIHPPGSVPNECRLHDQLSRKGY 745
P+ L H G PN CR Q+ R+G+
Sbjct: 28 PRPLNHVAGKPPNRCRFLRQIRRQGH 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,014,009
Number of Sequences: 37544
Number of extensions: 494462
Number of successful extensions: 1340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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