Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30726
(745 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger) fa... 31 0.81
At3g62640.1 68416.m07036 expressed protein 31 0.81
At2g21630.1 68415.m02573 transport protein, putative similar to ... 29 2.5
At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein co... 29 4.3
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 29 4.3
At3g43790.3 68416.m04680 transporter-related low similarity to S... 28 5.7
At3g43790.2 68416.m04679 transporter-related low similarity to S... 28 5.7
At3g43790.1 68416.m04678 transporter-related low similarity to S... 28 5.7
At3g15740.1 68416.m01994 zinc finger (C3HC4-type RING finger) fa... 28 7.5
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 27 9.9
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 27 9.9
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 27 9.9
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 27 9.9
At1g67410.1 68414.m07672 exostosin family protein contains Pfam ... 27 9.9
At1g25470.2 68414.m03163 AP2 domain-containing transcription fac... 27 9.9
At1g25470.1 68414.m03162 AP2 domain-containing transcription fac... 27 9.9
At1g08020.1 68414.m00875 expressed protein 27 9.9
>At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 200
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 154 SSC-SCGSLLITLSISFCGTNTPFSFFSIPNVPPVYSTRTRFISAILPDVL 5
SSC SC +L+ + CG + + + + PP + ++F SAI+P L
Sbjct: 149 SSCPSCRRILVPVKCDRCGHHASTAETQVKDQPPHHQHPSQFTSAIIPAFL 199
>At3g62640.1 68416.m07036 expressed protein
Length = 110
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 29 NKTSSSAVHWRYIRYAEKRKRRIGTAKRY 115
+KT ++A WR I KRK+RI T K Y
Sbjct: 55 SKTRTTATPWRLIDAETKRKKRIATYKTY 83
>At2g21630.1 68415.m02573 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 761
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 536 FWYALSGRYQHSA*QIVVTIASRLKYWNLSTSEYNSLSDGFQHE 405
F++ YQHS Q + + + + W + T LS+GF E
Sbjct: 481 FYFQFLTYYQHSNGQTRLRVTTLSRRWVMGTESLQELSNGFDQE 524
>At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 637
Score = 28.7 bits (61), Expect = 4.3
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Frame = -3
Query: 611 MRKYACSILFYSSSPKEFCSKEHCYFWYA---LSGRYQHSA*QIVVTIA-SRLKYWNLST 444
M K S+ F +SSPK F S + L+ + S + V A S +K W+ ++
Sbjct: 1 MSKKPKSVHFSTSSPKSFLSSFPSFTSLPASPLNQTFSQSMMEETVEAAESIIKKWDPNS 60
Query: 443 SEYNSLSDGFQHERQDRTTVRSCVGAVQNHESIVVMVKS----LNISRHFYPIVYREIRR 276
Y + F H R++ C+ ++ ++ S L +++H I + +
Sbjct: 61 PSYTKIISLFSHSRREAKEFIRCIRDLRRAMHFLISQHSKSAKLVLAQHLMQIAMARLEK 120
Query: 275 IFEFIVFVNMVQ 240
F I+ N Q
Sbjct: 121 EFFQILSSNRDQ 132
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 481 PSLRG*NIGT*APVSTTVFPTVSNMKDRTEPPYAVVSVPCRT 356
PSL +G +P S + +P + +K R+E VVS P T
Sbjct: 888 PSLHQVEVGQTSPRSQSEYPGTTKLKQRSERHEGVVSSPSST 929
>At3g43790.3 68416.m04680 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 342 YDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQ----PRSDGNNNLLCAVL 509
Y+ L +YGG LSF + VG+ + ++G + +FQ P + + LL +
Sbjct: 294 YNEIFSLWAVSDRSYGG--LSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIR 351
Query: 510 IAATQRIPEVTVF 548
++A IP ++ +
Sbjct: 352 LSAVLLIPLLSCY 364
>At3g43790.2 68416.m04679 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 342 YDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQ----PRSDGNNNLLCAVL 509
Y+ L +YGG LSF + VG+ + ++G + +FQ P + + LL +
Sbjct: 294 YNEIFSLWAVSDRSYGG--LSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIR 351
Query: 510 IAATQRIPEVTVF 548
++A IP ++ +
Sbjct: 352 LSAVLLIPLLSCY 364
>At3g43790.1 68416.m04678 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 478
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 342 YDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQ----PRSDGNNNLLCAVL 509
Y+ L +YGG LSF + VG+ + ++G + +FQ P + + LL +
Sbjct: 294 YNEIFSLWAVSDRSYGG--LSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIR 351
Query: 510 IAATQRIPEVTVF 548
++A IP ++ +
Sbjct: 352 LSAVLLIPLLSCY 364
>At3g15740.1 68416.m01994 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 224
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 285 FTIDDWIKMARDIKRFYHDYDG 350
F ++D + D+KR Y+DYDG
Sbjct: 3 FYVNDNVDNVIDVKRIYNDYDG 24
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 435 VLTGAQVPIFQPRSDGNNNLLCAVLIAATQRI 530
+ TG Q+ ++QP DG N + ++ + + R+
Sbjct: 277 IRTGHQLQVYQPHGDGENGPVTSIAFSVSGRL 308
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 435 VLTGAQVPIFQPRSDGNNNLLCAVLIAATQRI 530
+ TG Q+ ++QP DG N + ++ + + R+
Sbjct: 215 IRTGHQLQVYQPHGDGENGPVTSIAFSVSGRL 246
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 435 VLTGAQVPIFQPRSDGNNNLLCAVLIAATQRI 530
+ TG Q+ ++QP DG N + ++ + + R+
Sbjct: 277 IRTGHQLQVYQPHGDGENGPVTSIAFSVSGRL 308
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 329 SLNISRHFYPIVYREIRRIFEFIVFVNMVQNF 234
S+ +S HF+ YR ++ F+ I+FVN +F
Sbjct: 497 SVRVSCHFHH--YRSLKTFFQLILFVNQFVDF 526
>At1g67410.1 68414.m07672 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 430
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 671 KMLIHPPGSVPNECRLHDQL 730
K +HP G P+ CRL D +
Sbjct: 301 KFCLHPAGDTPSSCRLFDAI 320
>At1g25470.2 68414.m03163 AP2 domain-containing transcription
factor, putative similar to putative AP2 domain
transcription factor GI:6553944 from [Arabidopsis
thaliana]
Length = 287
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 249 IYEYDELKDSSDFTIDDWIKMARDIKRFYHD 341
++ + D S + D+W+ R +KRF H+
Sbjct: 19 VFTDPDATDDSSSSSDEWLPKPRKVKRFVHE 49
>At1g25470.1 68414.m03162 AP2 domain-containing transcription
factor, putative similar to putative AP2 domain
transcription factor GI:6553944 from [Arabidopsis
thaliana]
Length = 287
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 249 IYEYDELKDSSDFTIDDWIKMARDIKRFYHD 341
++ + D S + D+W+ R +KRF H+
Sbjct: 19 VFTDPDATDDSSSSSDEWLPKPRKVKRFVHE 49
>At1g08020.1 68414.m00875 expressed protein
Length = 93
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 332 KSLNISRHFYPIVYREIRRIFEFIVFVNMVQNFIIRVF 219
KS N+SR +PI Y+ +R FI + M ++ V+
Sbjct: 20 KSGNVSRIPFPIYYQRLRPCVTFIYTLQMTVKTLMEVY 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,852,477
Number of Sequences: 28952
Number of extensions: 405950
Number of successful extensions: 1163
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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