Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30722
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    26   5.2  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   5.2  

>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 292 LFQVPIFINHKH*HTVNLV*YYIKIVNPLSRTVSKGPD*FQTTY 161
           LF VP+ + HK     N++    +  NP S T+ +    FQ TY
Sbjct: 201 LFMVPLDVTHKVLLDANIIQLLRQHSNPFSSTLVELMTVFQQTY 244


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 46  LGHHLVIIIRHRSHKQK*YGL*HKYK 123
           LGH   +  RH S+K K Y L  +YK
Sbjct: 111 LGHRTAVRDRHPSYKAKTYSLVKEYK 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,144
Number of Sequences: 5004
Number of extensions: 54684
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)