Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30722
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815...    31   1.0  
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264...    29   4.1  
07_03_0232 + 15539586-15539696,15541524-15541727,15542612-155426...    29   5.4  
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948...    29   5.4  

>04_04_0418 +
           25077748-25078101,25079413-25079538,25080683-25081593,
           25081970-25082453
          Length = 624

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 187 GPD*FQTTYCFCLIFFCCNYHIYIYVINRITFVY 86
           GPD F+ T+  C I  CC   + +  I RI  VY
Sbjct: 573 GPDCFRLTFYVCAIVCCCGTLVSVVFIARIKPVY 606


>05_07_0181 -
           28225396-28225587,28226009-28226068,28226150-28226416,
           28227167-28227232,28228164-28228963,28229565-28229673,
           28230391-28232097
          Length = 1066

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 433 GKSPLTGRNVCKLSGDCVAEIF*CIQTISMYNERLISKQLELRNAY 570
           G + L+G + C L G  ++ +   +   S+Y ER++    +L NAY
Sbjct: 675 GSNDLSGASACALGGASLSGLPPSLCRSSIYEERVMRNLEQLENAY 720


>07_03_0232 +
           15539586-15539696,15541524-15541727,15542612-15542674,
           15542896-15543027,15543766-15543889,15545052-15545365,
           15545538-15545614,15545716-15545851,15546352-15546555,
           15546630-15546689
          Length = 474

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 499 KRFPRHNHQIVCIHCDRSMGTYLEL*IEVSKWMRQPM 389
           KR PR    +  I C+  +G YL   ++ S W  +P+
Sbjct: 147 KRLPRETKSLATI-CEELLGVYLSKELQCSDWSYRPL 182


>02_05_0036 -
           25292150-25293124,25294021-25294206,25294704-25294874,
           25295135-25295353,25295461-25295712,25295802-25295903,
           25296487-25296684,25296762-25297046,25297640-25297709,
           25297797-25297970,25298825-25298952,25299059-25299163,
           25299686-25300030,25300361-25300563,25300964-25301045,
           25301667-25301744
          Length = 1190

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/30 (40%), Positives = 24/30 (80%)
 Frame = -3

Query: 738 AIQWLNLIRLLIPVYFLGILEISNIFV*VL 649
           A++  + ++LLI +YF+GI+E ++IFV ++
Sbjct: 162 AMKKRSTLKLLIELYFVGIVEDASIFVNII 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,090,267
Number of Sequences: 37544
Number of extensions: 281836
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)