BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30722 (773 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815... 31 1.0 05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 29 4.1 07_03_0232 + 15539586-15539696,15541524-15541727,15542612-155426... 29 5.4 02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 29 5.4 >04_04_0418 + 25077748-25078101,25079413-25079538,25080683-25081593, 25081970-25082453 Length = 624 Score = 31.1 bits (67), Expect = 1.0 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -2 Query: 187 GPD*FQTTYCFCLIFFCCNYHIYIYVINRITFVY 86 GPD F+ T+ C I CC + + I RI VY Sbjct: 573 GPDCFRLTFYVCAIVCCCGTLVSVVFIARIKPVY 606 >05_07_0181 - 28225396-28225587,28226009-28226068,28226150-28226416, 28227167-28227232,28228164-28228963,28229565-28229673, 28230391-28232097 Length = 1066 Score = 29.1 bits (62), Expect = 4.1 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +1 Query: 433 GKSPLTGRNVCKLSGDCVAEIF*CIQTISMYNERLISKQLELRNAY 570 G + L+G + C L G ++ + + S+Y ER++ +L NAY Sbjct: 675 GSNDLSGASACALGGASLSGLPPSLCRSSIYEERVMRNLEQLENAY 720 >07_03_0232 + 15539586-15539696,15541524-15541727,15542612-15542674, 15542896-15543027,15543766-15543889,15545052-15545365, 15545538-15545614,15545716-15545851,15546352-15546555, 15546630-15546689 Length = 474 Score = 28.7 bits (61), Expect = 5.4 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -2 Query: 499 KRFPRHNHQIVCIHCDRSMGTYLEL*IEVSKWMRQPM 389 KR PR + I C+ +G YL ++ S W +P+ Sbjct: 147 KRLPRETKSLATI-CEELLGVYLSKELQCSDWSYRPL 182 >02_05_0036 - 25292150-25293124,25294021-25294206,25294704-25294874, 25295135-25295353,25295461-25295712,25295802-25295903, 25296487-25296684,25296762-25297046,25297640-25297709, 25297797-25297970,25298825-25298952,25299059-25299163, 25299686-25300030,25300361-25300563,25300964-25301045, 25301667-25301744 Length = 1190 Score = 28.7 bits (61), Expect = 5.4 Identities = 12/30 (40%), Positives = 24/30 (80%) Frame = -3 Query: 738 AIQWLNLIRLLIPVYFLGILEISNIFV*VL 649 A++ + ++LLI +YF+GI+E ++IFV ++ Sbjct: 162 AMKKRSTLKLLIELYFVGIVEDASIFVNII 191 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,090,267 Number of Sequences: 37544 Number of extensions: 281836 Number of successful extensions: 459 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 459 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2068401984 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -