Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30722
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)                 30   2.4  
SB_15940| Best HMM Match : LMP (HMM E-Value=4.1)                       29   4.2  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   7.3  

>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -3

Query: 639 YSETEDIHCLKFISY*LTIH-----SVFICVS*FKLLRY*SFIIHANSLNALKDFRDTIT 475
           YS    I  L F++Y LT H     SVF CVS F  +R    ++   ++++L D R  + 
Sbjct: 64  YSSPALISFLSFMTYALTGHTLYASSVFTCVSLFNSVRNVMTLLFPVAMSSLNDLRVALR 123

Query: 474 R 472
           R
Sbjct: 124 R 124


>SB_15940| Best HMM Match : LMP (HMM E-Value=4.1)
          Length = 378

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 494 ISATQSPDSLHTLRPVNGDLPRAVNRSE*MDAATY 390
           + A Q+P+S H  RP +  L +A+N  E  +A  Y
Sbjct: 150 LEALQNPESYHQARPKDARLDKAINLLERFNALGY 184


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 163 YCFCLIFFCCNYHIYIY 113
           YC+C  ++CC Y+ Y Y
Sbjct: 491 YCYCYCYYCC-YYCYCY 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,811,069
Number of Sequences: 59808
Number of extensions: 376991
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)