Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30719
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    28   1.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.6  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    27   3.6  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   6.3  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    26   6.3  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    26   6.3  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.4  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   8.4  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    25   8.4  

>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -3

Query: 293 VRSHTIAKITFYDLQIESALSIENGIRTFKTS*V*KKKYRPAAEFLYKHITQLLFLQEE 117
           V  HT+ K+T +D++I +     + IR+F  + + + K R   + L + I  + + Q +
Sbjct: 290 VSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSK 348


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 223 TESGHLKHLRFKKKSTDQRQSSFTNILLNCCFCKKKQGN 107
           T  GH  HL  +    D    +F  +L NC    K+  N
Sbjct: 151 TFKGHKNHLENRSFFHDSESDNFKVVLSNCAINSKEDNN 189


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 127 CKKKQGN*KLKYVAILTNQNFYFENRINMQ 38
           CK       L+Y  +L +QNF F  R+N+Q
Sbjct: 156 CKNTGRRGTLEYQLLLDDQNFTFTPRLNVQ 185


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 198 RCFKCPDSVFYR*CTFDLEVVKCNFCNCVRPYNTASQKIVDFFHNF 335
           RC  C   +       D   + CN C  VR  + +S +  D +HNF
Sbjct: 103 RCHDCRKQIIDSNFKRDNRTIFCNDCKQVRHPSRSSDESAD-YHNF 147


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 195 LRCFKCPDSVFYR*CTFDLEVVKCNFC 275
           + C++  ++ + R C    +V KCN C
Sbjct: 147 IECYEMAETEYVRACIMQKQVPKCNSC 173


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 330 NFAEKYFWHNFSKLVNYRVNLI 395
           N AEK+ WH F  + NY  NL+
Sbjct: 198 NTAEKHGWHKFISMQNYH-NLL 218


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 241 LSIWRS*NVIFAIVCDLTILL 303
           L I++  N+IFA++C + +LL
Sbjct: 348 LPIYQVLNIIFAVICPIVLLL 368


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -1

Query: 268  LHFTTSKSKV---HYL*KTESGHLKHLRFKKKSTDQRQSSFTNILLN 137
            + +   KSKV   H   K     L  + FKKK  +QR  SF   L N
Sbjct: 932  IRYRIQKSKVDDLHEQLKFVKDKLNKMSFKKKKNEQRSQSFQVELSN 978


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 342 KYFWHNFSKLVNYRVNLIVLPTNLIDPL*VDCQNLRLLGM*TC 470
           K  + N + +     N+  LP N+++ +  +C NL+ L +  C
Sbjct: 114 KLLYQNLNLVTINFSNIFSLPANILEYISDNCPNLKALNIGNC 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,059
Number of Sequences: 5004
Number of extensions: 58931
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)