Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30719
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)             34   0.10 
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)                  30   2.2  
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               29   2.9  
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   6.7  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 21/66 (31%), Positives = 36/66 (54%)
 Frame = -1

Query: 709 ANSISNTNEQLMIYSFHTSTEITRV*YYNIINSLNHYSFFVRKLLFRIEKHNHNQLLRSV 530
           A+ I   N+QL+I   + +     V Y+  + ++NH SF   +L ++ EK ++  LL SV
Sbjct: 376 ADQILIANKQLVIPDLYLNAGGVTVSYFEWLKNINHVSF--GRLTWKYEKESNYHLLESV 433

Query: 529 CTNLTR 512
             +L R
Sbjct: 434 QKSLER 439


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -1

Query: 706 NSISNTNEQLMIYSFHTSTEITRV*YYNIINSLNHYSFFVR----KLLFRIEKHNHNQLL 539
           N ++ T+   M+   H    +TR+  +N++  +++++   R     ++ RI  HNHN + 
Sbjct: 162 NMVTRTHNHNMVTRIHNHNMVTRIHNHNMVTRIHNHNMVTRAHNHNMVTRI--HNHNMVT 219

Query: 538 RS 533
           R+
Sbjct: 220 RT 221



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 706 NSISNTNEQLMIYSFHTSTEITRV*YYNIINSLNHYSFFVRKLLFRI--EKHNHNQLLR 536
           N ++  +  +M+   H    +TR+  +N++  +++++   R     +    HNHN + R
Sbjct: 117 NMVTRAHNHIMVTRAHNHNMVTRIHNHNMVTRIHNHNMVTRAHNHNMVTRTHNHNMVTR 175



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/58 (20%), Positives = 30/58 (51%)
 Frame = -1

Query: 706 NSISNTNEQLMIYSFHTSTEITRV*YYNIINSLNHYSFFVRKLLFRIEKHNHNQLLRS 533
           N +++ +  +M+   H    +TR+  +N++  +++++   R        HNHN + R+
Sbjct: 72  NMVTSRHNHIMVTRAHNHIMVTRIHNHNMVTRIHNHNMVTR-------THNHNMVTRA 122



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 700 ISNTNEQLMIYSFHTSTEITRV*YYNIINSLNHYSFFVR--KLLFRIEKHNHNQLLR 536
           ++  +  +M+   H    +TR+  +N++   ++++   R    +     HNHN + R
Sbjct: 83  VTRAHNHIMVTRIHNHNMVTRIHNHNMVTRTHNHNMVTRAHNHIMVTRAHNHNMVTR 139



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 706 NSISNTNEQLMIYSFHTSTEITRV*YYNIINSLNHYSFFVRKLLFRI--EKHNHNQLLRS 533
           N ++ T+   M+   H    +TR   +N++  +++++   R     +    HNHN + R+
Sbjct: 108 NMVTRTHNHNMVTRAHNHIMVTRAHNHNMVTRIHNHNMVTRIHNHNMVTRAHNHNMVTRT 167


>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 259

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 312 FSVKQYCKVAHNCKNYILR--PPNRKCIIYRKR 220
           + +K+ C     C NY+ R  PP  KC  YRKR
Sbjct: 139 YYLKRRCPPLTKCTNYLKRRCPPLTKCTNYRKR 171


>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 291

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 306 VKQYCKVAHNCKNYILR--PPNRKCIIYRKR 220
           +K+ C     C NY+ R  PP  KC  YRKR
Sbjct: 248 LKRRCPPLTKCTNYLKRRCPPLTKCTNYRKR 278


>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 458

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -2

Query: 303 KQYCKVAHNCKNYILR--PPNRKCIIYRKR 220
           K+ C     C NY  R  PP  KC  YRKR
Sbjct: 89  KRRCPPLTRCTNYRKRRCPPLNKCTYYRKR 118



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -2

Query: 303 KQYCKVAHNCKNYILR--PPNRKCIIYRKR 220
           K+ C     C NY  R  PP  KC  YRKR
Sbjct: 201 KRRCPPLTRCTNYRKRRCPPLTKCTYYRKR 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,229,164
Number of Sequences: 59808
Number of extensions: 380492
Number of successful extensions: 668
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)