Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30719
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   4.5  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    29   4.5  
U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop heli...    28   5.9  
AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81513-1|CAB04174.1|  346|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine re...    28   7.9  

>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
           protein DH11.3 protein.
          Length = 1270

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 283 TQLQKLHFTTSKSKVHYL*KTESGHLKHLRFKKKS 179
           T L+KLHF  +  ++HYL + ES  L  + F KKS
Sbjct: 36  TLLRKLHFFITYKQIHYLKRLESEDLDLINFAKKS 70


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 271  KLHFTTSKSKVHYL*KTESGHLKHLRFKKKSTDQ 170
            +LH T+S++++  +   E  HL+ L+  ++ TDQ
Sbjct: 2939 QLHLTSSENEIETMKAVEKIHLEDLKIAREETDQ 2972


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 271  KLHFTTSKSKVHYL*KTESGHLKHLRFKKKSTDQ 170
            +LH T+S++++  +   E  HL+ L+  ++ TDQ
Sbjct: 2939 QLHLTSSENEIETMKAVEKIHLEDLKIAREETDQ 2972


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 271  KLHFTTSKSKVHYL*KTESGHLKHLRFKKKSTDQ 170
            +LH T+S++++  +   E  HL+ L+  ++ TDQ
Sbjct: 2939 QLHLTSSENEIETMKAVEKIHLEDLKIAREETDQ 2972


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 367 FEKLCQKYFSAKL*KKSTIFC 305
           FE +CQKYF  KL +    FC
Sbjct: 57  FENICQKYFGFKLFRNHNHFC 77


>U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop helix
           protein 26 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -1

Query: 376 LTNFEKLCQKYFSAKL*KKSTIFCEAVL*GRTQLQKLHFTTSKSKVHYL*KTESGHLKHL 197
           L  F+K+ QK  S KL K+  +F    L    QL    F+TS   +  + K +S   +  
Sbjct: 34  LNEFKKIVQKSESEKLSKEEVLFRIVKLLSGIQLHHESFSTSPGPIRSIKKIKSDREQVR 93

Query: 196 RFKK 185
           R K+
Sbjct: 94  RNKR 97


>AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical
           protein H10E21.2 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 265 VIFAIVCDLTILLHRKLLIFFIILPKNIFGTI 360
           ++F  V DL +LLH  L + F    + IFG I
Sbjct: 55  ILFICVADLLVLLHLTLFVHFQFEKQWIFGNI 86


>Z81513-1|CAB04174.1|  346|Caenorhabditis elegans Hypothetical
           protein F26D2.1 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 217 IPFSIDNALSIWRS*NVIFAIVCDLTILLHRKLLIF 324
           IP+  D A   WR  N  F + C L I  H  ++IF
Sbjct: 183 IPYDADGA---WRFNNACFLLTCVLLIFGHYSIIIF 215


>AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine
           receptor, class t protein59 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +3

Query: 285 RPYNTASQKIVDFFHNFAEKYFWHNFSKLVNYRVNLIVLPTNLI 416
           R  N  S+  + FF NF EK    NF K V++R   I L  N I
Sbjct: 140 RNSNFDSKFKLKFFKNFGEKNLEKNFGKNVHFRNIKIFLIQNKI 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,439
Number of Sequences: 27780
Number of extensions: 334964
Number of successful extensions: 714
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)