Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30718
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine re...    29   3.5  
AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    28   6.1  

>AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 32 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 224 FXIAVAQCPKNYTXAHRSITFTIALXXNI 310
           F  AV QC  N+  AHR+I F I L  +I
Sbjct: 161 FGCAVNQCFYNFWTAHRTIIFAIILVSSI 189


>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 259 IIFWALSNSNXKVYNFMIHKASPI*VSKFIFKNYFSFNSICXVH 128
           ++ WALS+S+     +  + A  + ++ F+F   F   SIC  H
Sbjct: 247 VLSWALSSSSGASIGYFHYAALLVIIAVFVFVLDFYAESICFQH 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,392,900
Number of Sequences: 27780
Number of extensions: 166133
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)