Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30718
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74710.2 68414.m08655 isochorismate synthase 1 (ICS1) / isoch...    29   3.3  

>At1g74710.2 68414.m08655 isochorismate synthase 1 (ICS1) /
           isochorismate mutase identical to GI:17223087 and
           GB:AF078080; contains Pfam profile PF00425: chorismate
           binding enzyme; contains TIGRfam profile TIGR00543:
           isochorismate synthases; identical to cDNA isochorismate
           synthase 1 precursor (ICS1) nuclear gene for plastid
           product GI:17223086
          Length = 622

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 187 ILVMLYES*NYILXNCC--CSMPKKLYTRTQINYIYNRIVXQH**MIF 324
           I+V+ Y++ N+    CC  CS P +L  + Q  ++Y R++ +    +F
Sbjct: 564 IMVLCYQNPNFYSLFCCCFCSSPSQLNMKQQ--HLYRRLIEERVTFVF 609


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,390,091
Number of Sequences: 28952
Number of extensions: 139077
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)