Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30713
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.70 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.92 
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   2.1  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   2.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   4.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   4.9  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   6.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 103 TSLKTPAAHNRRPTSDRAGAQSGLLKRRDRVDAE 204
           T   TP    + PTSD+A    G +  +  VD E
Sbjct: 840 TPRSTPDKREKSPTSDKAQEADGEVVVKKEVDEE 873


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 254  WRPPVRRPWDG 222
            W+PP R  W+G
Sbjct: 1016 WKPPAREEWNG 1026


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 210 YIHPTVPRTPDRW 248
           YIHP  P T ++W
Sbjct: 55  YIHPDSPSTGEQW 67


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 210 YIHPTVPRTPDRW 248
           YIHP  P T ++W
Sbjct: 55  YIHPDSPSTGEQW 67


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 170 GY*NGGTGLTQSTLHPSHRP 229
           GY +GG G      H +HRP
Sbjct: 15  GYMDGGAGAGLYEPHVAHRP 34


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 193 PCPAVSIAPTGLRPGPR 143
           PCP + I   G R GP+
Sbjct: 323 PCPDIIIDVHGTRRGPK 339


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 264 PPVPSFSGPRARFDGA 311
           PP P+ S P+   DG+
Sbjct: 457 PPAPAVSNPQNEVDGS 472


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 291 RARFDGAALHLSPERSGERGLPSPGFLLRVSVQSTPP 401
           R+  D  AL  S   S    +PSP     +S   TPP
Sbjct: 112 RSLEDLLALDESTVSSSTSSIPSPSTTDDLSTNPTPP 148


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 118 PAAHNRRPTSDRAGAQSGLLK 180
           P A  +RP +  +GAQ   LK
Sbjct: 224 PTAEEKRPRTAFSGAQLARLK 244


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 273 EPVVVSLAATGPASVGRWDGCNVLCVN 193
           EP + S  ATG   +    G N+LC +
Sbjct: 31  EPQLHSPCATGSNGLPAGAGSNLLCAS 57


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 239 GPVAASDTTTGSLVQRAESPL*WRR 313
           G +   DT+  S +QRA +   +RR
Sbjct: 110 GDLGGGDTSPNSALQRARADKTYRR 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,941
Number of Sequences: 336
Number of extensions: 3313
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)