Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30713
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom... 28 0.72
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 28 0.95
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 28 0.95
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 26 2.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 2.9
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 25 5.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 5.1
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 6.7
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 6.7
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 8.9
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 8.9
>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 0.72
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 310 PRYTFPQSGQGNAVYHHPAS-YCG 378
P Y +SG+G+ VY HP S CG
Sbjct: 49 PYYFIEKSGKGSVVYFHPTSDLCG 72
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.9 bits (59), Expect = 0.95
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 204 AHYIHPTVPRTPDRWPPATRPPVPSFSGPRARFDGAALHLS-PERSGER-GLPSPGFLLR 377
+H+ + + + PP + P FS P + ++LH S P+R + G SPG LLR
Sbjct: 82 SHHANTEIDSSSSMLPPPSSDP---FSSPLS----SSLHRSSPKRPHDSLGEESPGKLLR 134
Query: 378 VSVQSTP 398
SV+ P
Sbjct: 135 TSVKQEP 141
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 27.9 bits (59), Expect = 0.95
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 433 TRFVRGETQTWGGVLCTLTRNRKPGDGRPRSPDRSGE 323
T + G+T T G C++ +R+PG P P+ + E
Sbjct: 123 TIMLMGDTCTRGCRFCSVKTSRRPGPLDPNEPENTAE 159
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 221 GMDVMCSASTLSRRFNSPDWAPARSEVGRRL*AAGVF 111
G+ V+ +++ L RF P+W P R+ + + G+F
Sbjct: 197 GIGVIVASTCLLDRFRQPEWRPYRALIFVLMGLFGIF 233
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 219 PTVPRTPDRWPPATRPPVPSFSGPRARFDG 308
P+VP +P + P A++ +P+F G + G
Sbjct: 1578 PSVPTSPLKAPTASQLIIPNFDGSITNYSG 1607
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 349 VYHHPASYCG*ACRARHPTSGSLPAQNG 432
+YH +SY +C A + G PA+ G
Sbjct: 98 IYHGYSSYTASSCTAIYECEGDYPARTG 125
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 153 GRSPVGAIETAGQG*RRAHYIHPTVPRTPDRWPPATRPPVPSFSGP 290
GR A+ TA ++ H P V RTPD PP P + + GP
Sbjct: 42 GRMARQAMRTADISQKKLHV--PMVDRTPDEAPP---PVIVAVMGP 82
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/67 (22%), Positives = 26/67 (38%)
Frame = +2
Query: 218 SHRPTDAGPVAASDTTTGSLVQRAESPL*WRRVTPFPRAVRGTRSTITRLPIAGERAEHA 397
+H+ PVA+ T L+ R E W+ A + + P + ++A
Sbjct: 176 NHQRNAEKPVASDKITDAKLLARLERVRAWKESKAKQEASKKEEHKLNTKPQVTAKDQNA 235
Query: 398 TPRLGLS 418
P G+S
Sbjct: 236 MPSTGIS 242
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 ATRPPVPSFSGPRARFDGAALHLSPERSGERGLPSPGFLLRVSV---QSTPPHVW 410
++ P SFS P+A G S S PS L+ S+ TPP VW
Sbjct: 131 SSSPATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVW 185
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 339 GERGLPSPGFLLRVSVQSTPP 401
G G PSP L VS +TPP
Sbjct: 243 GSAGSPSPNRSLNVSNNTTPP 263
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Frame = -1
Query: 373 NRKPGDGRPRSPDR-SGE-------RCNAAPSKRALGPLNEGTGGRVAGGH 245
N+ GDG P SP SG R P+++ +G GG GGH
Sbjct: 417 NQGTGDGVPFSPSMPSGSSRGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGH 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,087
Number of Sequences: 5004
Number of extensions: 49500
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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