Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30713
(517 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 34 0.069
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 31 0.49
AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid deplete... 30 0.85
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 30 1.1
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 1.5
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 2.0
U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical p... 29 2.0
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 29 2.6
AL032658-4|CAA21746.1| 283|Caenorhabditis elegans Hypothetical ... 28 3.4
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 4.6
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 27 6.0
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 27 6.0
Z48717-7|CAA88605.1| 518|Caenorhabditis elegans Hypothetical pr... 27 8.0
U70858-1|AAB09176.2| 201|Caenorhabditis elegans Odorant respons... 27 8.0
AF324050-1|AAK01411.1| 201|Caenorhabditis elegans Ly-6-related ... 27 8.0
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 27 8.0
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 27 8.0
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 27 8.0
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 33.9 bits (74), Expect = 0.069
Identities = 33/109 (30%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Frame = +3
Query: 45 HRRKSPDPHPRGRWGMWELNLTKNSCRSQPAPYLGPGRSPVGAIETAGQG*RRAHYIHPT 224
H+ + P P WG W N R P P GP PV QG R + P
Sbjct: 51 HQPRHPGPPAHQDWGDWSAN-RDEQWRGPPGP-SGPSGPPV----YHNQGPPRGY--PPP 102
Query: 225 VPRTPDRWPPATRPPVPSFSGPRA-RFDGAALHL--SPERSGERGLPSP 362
P+ D W A P GP F G H P R G P P
Sbjct: 103 PPQGADTWRGAPPPAHHGHFGPPGHHFQGPPQHFPPGPPRPHFPGPPGP 151
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 31.1 bits (67), Expect = 0.49
Identities = 27/79 (34%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Frame = +3
Query: 129 QP-APYLGPGRSPVGAIETAGQG*RRAHYIHPTVPRTPDRWPPATRPPVPSFSGPRARFD 305
QP AP GR P G AG HP P P R +R P SG
Sbjct: 156 QPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSR-GTPGASGRPGPQG 214
Query: 306 GAALHLSPERSGERGLPSP 362
A P RSG G P P
Sbjct: 215 PAGAPGQPGRSGGAGTPGP 233
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 367 KPGD-GRPRSPDRSGERCNAAPSKRALGPLNEGTGGRVAGGHRSGVRGTVG 218
+PG G P +P R G+R P P +G G RSG GT G
Sbjct: 183 QPGHPGSPGNPGRGGQRSRGTPGASG-RPGPQGPAGAPGQPGRSGGAGTPG 232
>AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid depleted
protein 6 protein.
Length = 573
Score = 30.3 bits (65), Expect = 0.85
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 361 GDGRPRSPDRSGERCN-AAPSKRALGPLNEGTGGRVAGGHRSGVRG 227
G R RS DR G+R S G G GGR GG R G RG
Sbjct: 500 GGFRGRSSDRGGDRGGFRGRSGDRDGGFRGGFGGRGGGGFRGGDRG 545
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 219 PTVPRTPDRWPPA--TRPPVPSFSGPRARFDGAALHLSPERSGERGLPSP 362
PT P TP P + T PP PS + RA G L P R + P P
Sbjct: 259 PTKPPTPTSRPTSAPTIPPQPSANSTRAPDIGKTLSTQPPRRTPQPHPKP 308
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 355 GRPRSPDRSGERCNAAPSKRALGPLNEGTGGRVAGGHRSGVRGTVG 218
G+P P G R A P+ + P N+G G+ R G G G
Sbjct: 214 GQPGRPGPPGPRGEAGPAGQPGSPGNDGESGKPGNAGRPGPPGAPG 259
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 126 SQPAPYLG---PGRSPVGAIETAGQG*RRAHYIHPTVPRTPDRWPPATRPPVPSFSGPRA 296
++PAPY+ P R P IE R A YI PT R P+T P P PR
Sbjct: 192 ARPAPYIERPEPAR-PAPYIERPVPA-RPAPYIEPTPARPAPYIEPSTAKPQPRPQPPRT 249
Query: 297 R 299
R
Sbjct: 250 R 250
>U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical
protein F26A1.12 protein.
Length = 231
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 186 GQG*RRAHYIHPTVPRTPDRWPPATRPP-VPSFSGP 290
G+G H P P P R PPAT PP P+ S P
Sbjct: 39 GRGHHHKHGPRPPRPNRPPRPPPATPPPTTPAPSCP 74
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 28.7 bits (61), Expect = 2.6
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Frame = +2
Query: 155 PEPSRGY*NGGTGLTQSTLHPSHRPTDAGPVAAS----DTTTGSL----VQRAESPL*WR 310
P + +GGT T S PT GP S TT+GSL + ++SP
Sbjct: 336 PSTTSALTSGGTSTTSRASSASDDPTTTGPSTTSGSTASTTSGSLFSTSLGSSQSPGSSV 395
Query: 311 RVTPFPRAVRGTRSTITRLP 370
TP P + G + T P
Sbjct: 396 STTPGPSTISGISQSTTSGP 415
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 170 GY*NGGTGLTQSTLH-PSHRPTDAGPVAASDTTT 268
G+ NG G T T P+HRPT AG ++ TT
Sbjct: 330 GWTNGANGTTIDTSRGPTHRPTTAGWTNGANGTT 363
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 170 GY*NGGTGLTQSTLH-PSHRPTDAGPVAASDTTT 268
G+ NG G T T P+HRPT AG ++ TT
Sbjct: 378 GWTNGANGTTIDTSRGPTHRPTTAGWRNGANGTT 411
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 164 SRGY*NGGTGLTQSTLHPSHRPTDAGPVAASDTTT 268
+ G G T + +T P+HRPT AG ++ TT
Sbjct: 209 ANGITRGQTRVPGTTREPTHRPTTAGWTNGANGTT 243
>AL032658-4|CAA21746.1| 283|Caenorhabditis elegans Hypothetical
protein Y76A2B.5 protein.
Length = 283
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 396 ACSARSPAIGSRVMVDRVPLTALGKGVTRRHQSGLSAR*TREP 268
A + R A +++ +D +P+ +GKG T R S L ++ P
Sbjct: 11 AFTQRVAAFSTQLQIDPIPIVFVGKGTTPRQNSLLGPNDSQYP 53
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 138 PYLGPGR-SPVGAIETAGQG*RRAHYIHPTVPRTPDRWPPA--TRPP 269
P++ GR + VG + RR + P PRT + PPA ++PP
Sbjct: 1004 PHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQPP 1050
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 364 PG-DGRPRSPDRSGERCNAAPSKRALGPLNEGTGGRVAGGHRSGVRGTVG 218
PG DG+P +P + G+R + AP GP G G + G G G
Sbjct: 197 PGQDGQPGAPGQDGQRGSGAPG----GPGAPGNAGPAGPAGQDGAPGQDG 242
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 364 PG-DGRPRSPDRSGERCNAAPSKRALGPLNEGTGGRVAGGHRSGVRGTVG 218
PG DG+P +P + G+R + AP GP G G + G G G
Sbjct: 209 PGQDGQPGAPGQDGQRGSGAPG----GPGAPGNAGPAGPAGQDGAPGQDG 254
>Z48717-7|CAA88605.1| 518|Caenorhabditis elegans Hypothetical
protein T10B9.3 protein.
Length = 518
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 339 GERGLPSPGFLLRVSVQSTPPHVWVSPRTKRVGPL 443
G RG P G L++ PP + TK+ GP+
Sbjct: 31 GPRGFPGIGMLIQTIDHENPPFLKYRDWTKQYGPV 65
>U70858-1|AAB09176.2| 201|Caenorhabditis elegans Odorant response
abnormal protein2, isoform c protein.
Length = 201
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 63 DPHPRGRWGMWELNLTKNSCRSQPAPYL 146
D HP+ RW ++ L L SC S PYL
Sbjct: 39 DQHPQQRWRIYSLRLPCYSCMS---PYL 63
>AF324050-1|AAK01411.1| 201|Caenorhabditis elegans Ly-6-related
protein ODR-2 isoform2b protein.
Length = 201
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 63 DPHPRGRWGMWELNLTKNSCRSQPAPYL 146
D HP+ RW ++ L L SC S PYL
Sbjct: 39 DQHPQQRWRIYSLRLPCYSCMS---PYL 63
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 27.1 bits (57), Expect = 8.0
Identities = 28/81 (34%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Frame = +3
Query: 129 QP-APYLGPGRSPVGAIETAGQG*RRAHYIHPTVPRTPDRWPPATRP-PVPS-FSGPRAR 299
QP AP GR P G AG HP P P R +R P PS GP
Sbjct: 156 QPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPPGP 215
Query: 300 FDGAALHLSPERSGERGLPSP 362
G P SG G P P
Sbjct: 216 AGGPG---QPGHSGGAGSPGP 233
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 279 FSGPRARFDGAALHLSPERSGERGLPSPGFLLRVSVQSTPPHVWVSP 419
FS P F + +SP++S G P P + + + PP + SP
Sbjct: 663 FSTPPTVFFNSTPVISPQKSVSDGSPLPAYYNSAAFLTPPPTYYGSP 709
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 222 TVPRTPDRW--PPATRPPVPSFSGPRARFDGAALHLSPERSGERGLPSPGFLLRVSV 386
T P TP + PP PPVP S P R D + P+R ++ P P +R++V
Sbjct: 115 TNPGTPRIYLPPPPRPPPVPPLSPPE-RPDIPHARVLPQR--QKPTPKPDKEIRITV 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,100
Number of Sequences: 27780
Number of extensions: 336386
Number of successful extensions: 1075
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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