Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30713
(517 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g43710.2 68415.m05434 acyl-[acyl-carrier-protein] desaturase ... 33 0.15
At2g43710.1 68415.m05433 acyl-[acyl-carrier-protein] desaturase ... 33 0.15
At1g68790.1 68414.m07863 expressed protein 32 0.26
At3g51620.2 68416.m05659 expressed protein 31 0.46
At3g51620.1 68416.m05658 expressed protein 31 0.46
At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8) i... 30 1.1
At5g50220.1 68418.m06220 F-box family protein contains F-box dom... 28 3.2
At4g01985.1 68417.m00265 expressed protein 28 3.2
At1g17540.1 68414.m02157 protein kinase-related similar to serin... 28 3.2
At2g26520.1 68415.m03182 expressed protein 28 4.3
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 28 4.3
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 5.7
At4g17620.1 68417.m02636 glycine-rich protein 27 5.7
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 27 5.7
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 27 5.7
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 7.5
At3g27690.1 68416.m03457 chlorophyll A-B binding protein (LHCB2:... 27 7.5
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 7.5
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 27 7.5
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 27 7.5
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 27 9.9
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 27 9.9
At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1) domain... 27 9.9
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P... 27 9.9
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 27 9.9
>At2g43710.2 68415.m05434 acyl-[acyl-carrier-protein] desaturase /
stearoyl-ACP desaturase (SSI2) identical to gi:15149310;
contains Pfam profile PF03405: Fatty acid desaturase;
identical to cDNA stearoyl ACP desaturase (SSI2),
SSI2-FAB2 allele, GI:15149309
Length = 401
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 216 HPTVPRTPDRWPPATRPPVPSFSGPR 293
+P V P ++P +TRPP PSF P+
Sbjct: 6 NPLVASQPYKFPSSTRPPTPSFRSPK 31
>At2g43710.1 68415.m05433 acyl-[acyl-carrier-protein] desaturase /
stearoyl-ACP desaturase (SSI2) identical to gi:15149310;
contains Pfam profile PF03405: Fatty acid desaturase;
identical to cDNA stearoyl ACP desaturase (SSI2),
SSI2-FAB2 allele, GI:15149309
Length = 401
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 216 HPTVPRTPDRWPPATRPPVPSFSGPR 293
+P V P ++P +TRPP PSF P+
Sbjct: 6 NPLVASQPYKFPSSTRPPTPSFRSPK 31
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 31.9 bits (69), Expect = 0.26
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 442 RGPTRFVRGETQTWGGVLCTLTRNRKPGDGR-PRSPDRSGERCNAAPSKRALGPLNEGTG 266
RG + VRG +Q V +R+ KP DG PR R + S++A G +EG
Sbjct: 861 RGRGKSVRGRSQATKAV----SRDSKPSDGETPRKRQRE-QTSRITESEQAAGDSDEGVD 915
Query: 265 GRVAGGHR 242
GG R
Sbjct: 916 SITTGGRR 923
>At3g51620.2 68416.m05659 expressed protein
Length = 542
Score = 31.1 bits (67), Expect = 0.46
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +1
Query: 247 GRQRHDHRFPRSAGREPALMAPRYTFPQSGQGNAVYHHPASYCG*ACRARHPTS-GSLPA 423
GR H R PR+ GR + FP H+P G +C H S S P
Sbjct: 407 GRNSHQARSPRNNGRSMSQAHSEMNFPDRNTRERQLHYPNQTNG-SCDMSHTDSLDSFPD 465
Query: 424 QNG 432
NG
Sbjct: 466 TNG 468
>At3g51620.1 68416.m05658 expressed protein
Length = 755
Score = 31.1 bits (67), Expect = 0.46
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +1
Query: 247 GRQRHDHRFPRSAGREPALMAPRYTFPQSGQGNAVYHHPASYCG*ACRARHPTS-GSLPA 423
GR H R PR+ GR + FP H+P G +C H S S P
Sbjct: 633 GRNSHQARSPRNNGRSMSQAHSEMNFPDRNTRERQLHYPNQTNG-SCDMSHTDSLDSFPD 691
Query: 424 QNG 432
NG
Sbjct: 692 TNG 694
>At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8)
identical to SUVH8 [Arabidopsis thaliana] GI:13517757;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 755
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +1
Query: 43 STGENRRIPTRAAGGVCGS*TSLKTPAAHNRRPTSDRAGAQSGLLKRR 186
STG +R R G GS K P A++ T AG SGL KRR
Sbjct: 169 STGPGKRGRGRPKGSKNGS-RKPKKPKAYDNNSTDASAGPSSGLGKRR 215
>At5g50220.1 68418.m06220 F-box family protein contains F-box domain
Pfam:PF00646
Length = 357
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 117 SCRSQPAPYLGPGRSPVGAIETAGQG*RRAHYIH 218
SC++ Y GP R+ + +E G RR H +H
Sbjct: 310 SCQTLYVYYYGPKRNSMRRVEVEGTKYRRKHLVH 343
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = -1
Query: 361 GDGRPRSPDRSGERCNAAPSKRALGPLNEGTGGRVAGGHRSGVRGTVG 218
G G G A S A G + G GG V GG GV G VG
Sbjct: 316 GSGGASGGASGGASGGAGGSVGAGGGVGGGVGGGVGGGVGGGVGGAVG 363
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 289 GPLNEGTGGRVAGGHRSGVRGTVG 218
G G GG V GG GVRG VG
Sbjct: 494 GGAGGGVGGGVGGGVGGGVRGAVG 517
>At1g17540.1 68414.m02157 protein kinase-related similar to
serine/threonine protein kinase Fen [Lycopersicon
esculentum] GI:1809259
Length = 733
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 PTVPRTPDRWP-PATRPPVPSFSGPRARFDGAALHLSPERSGERGLPSPGF 368
P P+ P P P+ P + S GP + + SP +GE P+P +
Sbjct: 172 PQTPQAPQHPPHPSKHPSMMSDPGPTSSTSSESGRSSPALNGELSPPTPHY 222
>At2g26520.1 68415.m03182 expressed protein
Length = 145
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 210 YIHPTVPRTPDRWPPATRPPVPSFSGPRARFDGAALHLSPERSGER 347
+IHP P +P PP +P + SG A +G L E GE+
Sbjct: 83 HIHPHRP-SPSPTPPPRQPLHHTSSGVSAESEGHVADLDHETDGEK 127
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 27.9 bits (59), Expect = 4.3
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Frame = +3
Query: 126 SQPAPYLGPGRSPVGAIETAGQG*RRAHYIHP-TVPRTPDRWPPATRPPVPSFSGPRARF 302
S PAP P + G + H+ P T P P PAT PP P + PR
Sbjct: 136 SPPAPPPPEQLPPPASSPQGGPKKPKKHHPGPATSPPAPSA--PATSPPAPPNAPPR--- 190
Query: 303 DGAALHLSPERSGERG--LPSPGFLLRVSVQSTPP 401
+ H P +S G L SP + S S PP
Sbjct: 191 --NSSHALPPKSTAAGGPLTSPSRGVPSSGNSVPP 223
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 207 HYIHPTVPRTP-DRWPPATRPPVPSFSGP 290
HYI P P TP PP + PP +S P
Sbjct: 731 HYISPPPPPTPIHSPPPQSHPPCIEYSPP 759
>At4g17620.1 68417.m02636 glycine-rich protein
Length = 544
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 134 GALPRTGPEPSRGY*NGGTG 193
G LPR GP P RG GG G
Sbjct: 166 GLLPRPGPYPGRGGNRGGFG 185
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 134 GALPRTGPEPSRGY*NGGTGLTQSTLHPSHRP 229
GALP +G PS+G N +Q + HPS P
Sbjct: 512 GALPPSGMMPSQGVHNQFNIPSQGSAHPSAMP 543
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 134 GALPRTGPEPSRGY*NGGTGLTQSTLHPSHRP 229
GALP +G PS+G N +Q + HPS P
Sbjct: 512 GALPPSGMMPSQGVHNQFNIPSQGSAHPSAMP 543
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 222 TVPRTPDRWPPATRPPVPSFSGP 290
T P TP PP T PP P S P
Sbjct: 27 TQPTTPSAPPPVTPPPSPPQSPP 49
>At3g27690.1 68416.m03457 chlorophyll A-B binding protein (LHCB2:4)
nearly identical to Lhcb2 protein [Arabidopsis thaliana]
GI:4741950; similar to chlorophyll A-B binding protein
151 precursor (LHCP) GB:P27518 from [Gossypium
hirsutum]; contains Pfam PF00504: Chlorophyll A-B
binding protein
Length = 266
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 369 LLRVSVQSTPPHVWVSP-RTKRVGPLA 446
++R +V+STP +W P R K +GP +
Sbjct: 37 IMRRTVKSTPQSIWYGPDRPKYLGPFS 63
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 219 PTVPRTPDRWPPATRPPVPSFSGP 290
PT +P PP +PP P++S P
Sbjct: 462 PTPTYSPPIKPPPVKPPTPTYSPP 485
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 219 PTVPRTPDRWPPATRPPVPSFSGP 290
PT +P PP +PP P++S P
Sbjct: 512 PTPTYSPPIKPPPVKPPTPTYSPP 535
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 169 GLLKRRDRVDAEHITSIPPSHGRRTGGRQRHDHRFPRS 282
G KR+DRV+ + S P R+ GG++R + R+
Sbjct: 693 GSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRA 730
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 169 GLLKRRDRVDAEHITSIPPSHGRRTGGRQRHDHRFPRS 282
G KR+DRV+ + S P R+ GG++R + R+
Sbjct: 905 GSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRA 942
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 249 PPATRPPVPSFSGPRARFDGAAL--HLSPERSGERGLPSPGFLLRVSVQSTPPHVWVSPR 422
PP RPP+P P + DG A+ P + +P + R Q TP + P
Sbjct: 389 PPMMRPPLPPGPPPSSFQDGQAMIRPYVPNKPSFVKSAAPTVVRRPLAQHTPELTSMVPA 448
Query: 423 TKRV 434
+ RV
Sbjct: 449 SVRV 452
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 385 TLTRNRKPGDGRPRSPDRSGERCNAAPSKRALGPLNEGTGGR 260
T+ R R G ++ RSG + P++ LG NE GGR
Sbjct: 1505 TMLRPRAQPRGGRKNGRRSGTKGRKRPTQGTLGICNEVGGGR 1546
>At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein various predicted proteins
contains Pfam profile PF00564: PB1 domain
Length = 477
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = +3
Query: 288 PRARFDGAALHLSPERSGERGLPSP------GFLLRVSVQSTPPHVWVSPRT 425
PRA+ LS S R +PSP ++R+S PP V++ P +
Sbjct: 254 PRAKIQREVSTLSDPGSPRRDVPSPYGSTSSAPVMRISTPELPPPVFIKPES 305
>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 882
Score = 26.6 bits (56), Expect = 9.9
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 162 PVGAIETAGQG*RRAHYIHPTVPRTPDRWPPATRPPVPSFSGPRARFDGAALHLSPER 335
PV +TA +G + H + P +W P PSF GP FD A+ SPER
Sbjct: 598 PVQQRQTAVRGSTKVHVVRP------GKWEKIPPNPPPSFIGP---FDPFAVP-SPER 645
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 403 TSGSLPAQNGWDP*LLGGQVTDTTPVPTPWLGGGG 507
T GS + N P G + + P+P PW GG
Sbjct: 298 TQGSDASNNSSTPNAGTGTIPNANPLPNPWGATGG 332
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,418
Number of Sequences: 28952
Number of extensions: 330442
Number of successful extensions: 1215
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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