Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30712
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1116 - 34229234-34229440,34229534-34229593,34229663-342300...    28   10.0 

>02_05_1116 -
           34229234-34229440,34229534-34229593,34229663-34230073,
           34230357-34230687,34230781-34230867,34230952-34231331,
           34231531-34232105,34233035-34233272
          Length = 762

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 616 IQEVT*QLSKLPGTQDASSSKQYLNCIK 699
           ++EV  Q + +PG  + +    Y NC+K
Sbjct: 601 VEEVRRQFNTIPGLMEGTGKPDYANCVK 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,337,080
Number of Sequences: 37544
Number of extensions: 311996
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)