Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30708
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    28   0.068
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    27   0.21 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    27   0.21 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    27   0.21 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    27   0.21 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    27   0.21 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           27   0.21 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    27   0.21 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   1.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.5  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      22   5.9  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 693 NFSRVSHVRSPAQVYKWTTPVHSGRRSLN 607
           N S+ S   +P Q+Y W   VH G+ ++N
Sbjct: 187 NNSKSSQSSNPPQIYPWMKRVHLGQSTVN 215


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 693 NFSRVSHVRSPAQVYKWTTPVHSGRRSLN 607
           N S+     +P Q+Y W   VH G+ ++N
Sbjct: 187 NNSKSGQSSNPPQIYPWMKRVHLGQSTVN 215


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 693 NFSRVSHVRSPAQVYKWTTPVHSGRRSLN 607
           N S+     +P Q+Y W   VH G+ ++N
Sbjct: 187 NNSKSGQSSNPPQIYPWMKRVHLGQSTVN 215


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 693 NFSRVSHVRSPAQVYKWTTPVHSGRRSLN 607
           N S+     +P Q+Y W   VH G+ ++N
Sbjct: 187 NNSKSGQSSNPPQIYPWMKRVHLGQSTVN 215


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 693 NFSRVSHVRSPAQVYKWTTPVHSGRRSLN 607
           N S+     +P Q+Y W   VH G+ ++N
Sbjct: 187 NNSKSGQSSNPPQIYPWMKRVHLGQSTVN 215


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 693 NFSRVSHVRSPAQVYKWTTPVHSGRRSLN 607
           N S+     +P Q+Y W   VH G+ ++N
Sbjct: 143 NNSKSGQSSNPPQIYPWMKRVHLGQSTVN 171


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 693 NFSRVSHVRSPAQVYKWTTPVHSGRRSLN 607
           N S+     +P Q+Y W   VH G+ ++N
Sbjct: 187 NNSKSGQSSNPPQIYPWMKRVHLGQSTVN 215


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 693 NFSRVSHVRSPAQVYKWTTPVHSGRRSLN 607
           N S+     +P Q+Y W   VH G+ ++N
Sbjct: 187 NNSKSGQSSNPPQIYPWMKRVHLGQSTVN 215


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 107 DAICSVYCALYLSHNVIRFCIYSGHGFISETAL 9
           DA+ SVY +L  +  +  F IY+    ++   +
Sbjct: 66  DALKSVYASLLCTEKIFLFAIYTNLSILTTVTI 98


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 179 VVFQALASTVFPSGNVTTTLISGLDAICSVY 87
           V+ Q++ S  FP       L+SGL A+C +Y
Sbjct: 155 VMIQSV-SFAFPINLSVPVLLSGLIAMCGMY 184


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 179 VVFQALASTVFPSGNVTTTLISGLDAICSVY 87
           V+ Q++ S  FP       L+SGL A+C +Y
Sbjct: 388 VMIQSV-SFAFPINLSVPVLLSGLIAMCGMY 417


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 179 VVFQALASTVFPSGNVTTTLISGLDAICSVY 87
           V+ Q++ S  FP       L+SGL A+C +Y
Sbjct: 388 VMIQSV-SFAFPINLSVPVLLSGLIAMCGMY 417


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 327 GGLLALFCSYAGRSYGKSVW 386
           GG L + C +AG      VW
Sbjct: 525 GGTLIVHCPFAGHPVDSVVW 544


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 451 KGISSTDFNVLEGLIKKIAKEKQPFERLE-LTKEQLLEM 564
           +GI  T   +   L  +   EK+ FERL  L  ++LL++
Sbjct: 222 RGIPDTSKQLAAALGMQTTNEKEIFERLSVLPVDKLLQI 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,478
Number of Sequences: 336
Number of extensions: 3798
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)