Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30708
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...   254   1e-68
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    28   1.2  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   6.4  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    26   6.4  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   8.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.5  

>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score =  254 bits (622), Expect = 1e-68
 Identities = 116/232 (50%), Positives = 163/232 (70%), Gaps = 2/232 (0%)
 Frame = +1

Query: 43  YIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQGLAD 222
           +IQ R+ L+DK + +Y E +A+KP   + +TLPDGK ++  +W+TTP  +A  IS+GLAD
Sbjct: 22  FIQHRLDLFDKLQKEYKESLATKPREEIDITLPDGKVIKGTSWETTPISIAASISKGLAD 81

Query: 223 ATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCY 402
              +A VN E WDL RPLE  C L+L  +++ + + VFWHSSAH+LGEA E  +   LC 
Sbjct: 82  RVTVAIVNGEPWDLTRPLEASCTLKLCDFNDPEGKRVFWHSSAHILGEATELSFHCHLCI 141

Query: 403 GPPIEEGFYYDMYYPE-KGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDYNP 579
           GPP +EGF+Y+M     + I++ D++ +E   K+  K+KQPFERL ++KE LLEMF YN 
Sbjct: 142 GPPTDEGFFYEMGIDNGRVITNDDYSSIESYAKQAIKQKQPFERLVISKEGLLEMFRYNK 201

Query: 580 FKVRILNEKV-QTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSATYW 732
           +K  I+  K+    +TTVYRCGPLIDLC GPHV HTG++K+  VTKNS++Y+
Sbjct: 202 YKQYIIQTKIPDGASTTVYRCGPLIDLCTGPHVPHTGRIKSFAVTKNSSSYF 253


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +1

Query: 58  ITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQGLADATIIA 237
           + LW    ++   ++    D+   V +   KT   KA     +DV   +S+    A++ A
Sbjct: 428 VRLWQCSPSRNQHELVPSNDLDEQVIINSCKTFTHKAMV---FDVKWCVSEPCCFASVDA 484

Query: 238 RVNNELWDLDRPLE 279
             N  LWDL + +E
Sbjct: 485 LGNLNLWDLQKDVE 498


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 94  EQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGI 204
           E  A+K   +V+   P G   E+K WK +   V K +
Sbjct: 27  EHEATKSSETVIEMTPSGPIAESKKWKESIARVVKSV 63


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 191 TSYGVVFQALASTVFPS---GNVTTTLISGLDAICSVYC 84
           T+Y  + Q+L S + P      VTT L+  +  I +VYC
Sbjct: 182 TAYNSIKQSLQSRLPPDEKLSTVTTFLVGSVAGIITVYC 220


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 289 YSLLLEADLDPTVHC 245
           YS+L++ D+DP V+C
Sbjct: 87  YSVLIDDDMDPLVYC 101


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 424  FYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLEL-TKEQLLEMFDYNPFKV 588
            F+ D+Y P K I S   + L  ++ +   +K P E L+   +  L+ + D+N   V
Sbjct: 1405 FFKDLYSPHKEIYSVAIDALRHVLSQ--NQKLPKELLQSGLRPILMNLSDHNKLSV 1458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,675
Number of Sequences: 5004
Number of extensions: 62550
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)