Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30708
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813...   189   2e-48
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451...    65   6e-11
07_01_0057 + 431084-431105,431149-431297,431380-431526,431622-43...    29   5.1  
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225...    28   8.8  
07_03_0118 - 13600948-13602174                                         28   8.8  
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758...    28   8.8  

>08_02_0069 -
           11880841-11880936,11881150-11881221,11881263-11881343,
           11881471-11881542,11882549-11882770,11882849-11882941,
           11883509-11883601,11884546-11884632,11884958-11884990,
           11885091-11885185,11886590-11886674,11886778-11886864,
           11887757-11887846,11887929-11888057,11888668-11888757,
           11888849-11888908,11889074-11889311,11889852-11890054
          Length = 641

 Score =  189 bits (461), Expect = 2e-48
 Identities = 96/230 (41%), Positives = 137/230 (59%), Gaps = 2/230 (0%)
 Frame = +1

Query: 49  QKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQGLADAT 228
           QKRI  +++ +A+   +  +     + +TLPDG   + K W +TP D+AK IS GLA++ 
Sbjct: 42  QKRIRQFEEIQAKQALERLNIGGEPIRITLPDGAVKDGKKWISTPMDIAKEISSGLANSC 101

Query: 229 IIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGP 408
           +IA+VN  LWD+ RPLEGDC+L+L ++D+ + +  FWHSSAH+LGE++ER YG  LC GP
Sbjct: 102 LIAQVNGTLWDMTRPLEGDCELKLFKFDSNEGRDTFWHSSAHILGESLERAYGCKLCIGP 161

Query: 409 PIE--EGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDYNPF 582
                EGFYYD YY +  ++ T F +++   +K                           
Sbjct: 162 CTTRGEGFYYDAYYNDLTLNETHFGIIDAQAQKAV------------------------- 196

Query: 583 KVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSATYW 732
            V I+NE  +  T TVYRCGPL+DLCRGPH+ +T  VKA    K S++YW
Sbjct: 197 AVEIINELPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAFACLKASSSYW 246


>02_04_0121 -
           19943988-19944251,19944534-19944734,19944802-19945124,
           19945283-19945316,19945479-19945856,19946425-19946678,
           19946791-19946938,19947052-19947198,19947287-19947664
          Length = 708

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 38/134 (28%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
 Frame = +1

Query: 349 AHMLGEAMERVYGGC-LCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPF 525
           AH++  A+++++    +  GP I+ GFYYD  +  + ++  D   ++  + +I ++  P 
Sbjct: 128 AHVMAMAVQKLFPNSKVTIGPWIDNGFYYD--FDMEPLTDKDLKRIKKEMDRIIRKNLPL 185

Query: 526 ERLELTKEQLLEMFDY--NPFKVRILNEKVQTPTTTVYRCGP-LIDLCRGPHVRHTGKV- 693
            R E+++E+  +  +    P+K+ IL E ++    T+Y  G    DLC GPHV  TGK+ 
Sbjct: 186 VREEVSREEAQKRIEALNEPYKLEIL-EGIKEDPITIYHIGEEWWDLCAGPHVESTGKID 244

Query: 694 -KALKVTKNSATYW 732
            +A+++   +  YW
Sbjct: 245 RRAVELESVAGAYW 258


>07_01_0057 +
           431084-431105,431149-431297,431380-431526,431622-431752,
           431791-431894,432949-433128,433481-433581,434030-434185,
           434679-434731,434818-434875,435162-435282,436010-436215
          Length = 475

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -3

Query: 240 SGYYRCVSQTLTDSF---GNIIRCGFPSFSFHSLPIR*CDHN 124
           S  Y C S  L+  F   GN++ CG  + S   L +R   HN
Sbjct: 261 SWMYHCKSDILSQQFMQSGNVVLCGLRNGSIFPLDVRQKQHN 302


>07_03_0961 - 22921761-22921850,22922204-22922338,22922409-22922531,
            22922621-22922707,22922780-22922831,22922939-22923063,
            22923724-22923932,22924206-22924407,22924526-22924630,
            22925353-22925414,22925755-22925944,22926017-22926112,
            22926203-22926305,22927019-22927122,22927264-22927395,
            22928257-22928343,22929121-22929206,22929291-22929383,
            22932197-22932284,22932402-22932514,22932621-22932743,
            22934153-22934204,22934365-22934408,22934498-22934571,
            22934655-22934746,22935594-22935661,22937146-22937221,
            22937323-22937679
          Length = 1055

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 478  VLEGLIKKIAKEKQPFERLELTKEQLLEMFDYNPFKVRILNEKV 609
            + EG +K   KE +     +L KE+L+E FD N  KV    +K+
Sbjct: 968  ISEGTLKFDRKEAEVAALRDLKKEELIEFFD-NHVKVNAPRKKI 1010


>07_03_0118 - 13600948-13602174
          Length = 408

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 445 PEKGISSTDFNVLEGLIKKIAKEKQP-FERLELTKEQLLEMFDYNPFKVRILNEKVQ 612
           P  G+    F +   L  +  K +   F  L  TKEQ++E F  +P+ + + N+KV+
Sbjct: 257 PSSGMFPYSFGLFARLHPRKWKGRMDNFLSLGWTKEQVIEAFVRHPYCMSVSNDKVK 313


>06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,
            7587274-7587452,7587913-7587991,7588403-7588537,
            7588651-7588800,7588887-7588997,7589084-7590004,
            7590351-7590623,7590853-7591062,7591425-7591573,
            7591716-7592052
          Length = 996

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
 Frame = +1

Query: 340  HSSAHMLGEAMERVYGGCLCYGPPIE--EGFYYDMYYPEKGISSTDFNVLEGLIKKIAKE 513
            H++ H+L  A++ + G        +   +   +D  +  + +S  +   +E L+ +    
Sbjct: 677  HTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNF-HRPLSEEELMKIESLVNQWVSS 735

Query: 514  KQPFERLELTKEQLLEMFDY-NPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGK 690
                E    TK  ++++ D  N   + +  EK       V   G  ++LC G HV +T +
Sbjct: 736  ATHLE----TK--VMDLQDAKNAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVSNTAE 789

Query: 691  VKALKV 708
            ++  K+
Sbjct: 790  IRGFKI 795


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,621,346
Number of Sequences: 37544
Number of extensions: 400856
Number of successful extensions: 1082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)