Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30708
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 350 5e-97
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 350 5e-97
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 30 2.0
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 30 2.0
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 30 2.0
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan... 29 3.4
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella... 29 3.4
U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family pr... 28 6.0
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 350 bits (861), Expect = 5e-97
Identities = 150/242 (61%), Positives = 194/242 (80%)
Frame = +1
Query: 7 TNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPY 186
+ A ++M PWP +I++RI LWDK KA+Y +IA+K + +TLPDGK E K W+TTP+
Sbjct: 2 SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 61
Query: 187 DVAKGISQGLADATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGE 366
++A+ IS+GLA+A +IA+VN +WDLDRP EG+ KLELL++D+ +A+ VFWHSSAH+LGE
Sbjct: 62 EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 121
Query: 367 AMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTK 546
AMER GG LCYGPPI+EGFYYDM++ + I DF ++ ++K K+KQ FERLE+TK
Sbjct: 122 AMERYCGGHLCYGPPIQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTK 181
Query: 547 EQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSAT 726
E LLEMF YN FKVRI+ EK+ TP TTVYRCGPLIDLCRGPHVRHTGKVKA+ +TKNS++
Sbjct: 182 EDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLIDLCRGPHVRHTGKVKAMAITKNSSS 241
Query: 727 YW 732
YW
Sbjct: 242 YW 243
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 350 bits (861), Expect = 5e-97
Identities = 150/242 (61%), Positives = 194/242 (80%)
Frame = +1
Query: 7 TNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPY 186
+ A ++M PWP +I++RI LWDK KA+Y +IA+K + +TLPDGK E K W+TTP+
Sbjct: 43 SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 102
Query: 187 DVAKGISQGLADATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGE 366
++A+ IS+GLA+A +IA+VN +WDLDRP EG+ KLELL++D+ +A+ VFWHSSAH+LGE
Sbjct: 103 EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 162
Query: 367 AMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTK 546
AMER GG LCYGPPI+EGFYYDM++ + I DF ++ ++K K+KQ FERLE+TK
Sbjct: 163 AMERYCGGHLCYGPPIQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTK 222
Query: 547 EQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSAT 726
E LLEMF YN FKVRI+ EK+ TP TTVYRCGPLIDLCRGPHVRHTGKVKA+ +TKNS++
Sbjct: 223 EDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLIDLCRGPHVRHTGKVKAMAITKNSSS 282
Query: 727 YW 732
YW
Sbjct: 283 YW 284
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 127 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 264
+V+LPD K++ A+AWK K + + + +VNNEL DL
Sbjct: 92 IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 127 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 264
+V+LPD K++ A+AWK K + + + +VNNEL DL
Sbjct: 92 IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 127 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 264
+V+LPD K++ A+AWK K + + + +VNNEL DL
Sbjct: 92 IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139
>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
abnormal protein1 protein.
Length = 1732
Score = 29.1 bits (62), Expect = 3.4
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 8/194 (4%)
Frame = +1
Query: 64 LWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYD--VAKGISQGLADATIIA 237
L DKY AQY + + D+S V+ + + A + Y + + +++ D T IA
Sbjct: 1432 LLDKYVAQYAAILVHRNDLSRVLAVLERYGASANPANFSIYKLLMEETLAKPRFDYTEIA 1491
Query: 238 RVNNELWDLDRPLEGDCKLELLRWDNT--DAQAVFWHSSAHMLGEAMERVYGGCLCYGPP 411
RV N D+ L+ + + + ++ +G+++ V CL
Sbjct: 1492 RVRNVHLDVYNALQKESSEHFEEFSRALWALHLIAMRTALEEIGDSVPEVQKLCLKQSLS 1551
Query: 412 I---EEGFYYDMYYPEKGISSTDF-NVLEGLIKKIAKEKQPFERLELTKEQLLEMFDYNP 579
+ + D + E G ++ D+ + E L + + ++ +E E+ DY+P
Sbjct: 1552 LLRYTDILVADRIFYEAGAAAKDYGSEYESLGFLLLNHY--LDLVDAIEEGNGELVDYSP 1609
Query: 580 FKVRILNEKVQTPT 621
F+ + +V PT
Sbjct: 1610 FENSDIPTEVSLPT 1623
>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1737
Score = 29.1 bits (62), Expect = 3.4
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 8/194 (4%)
Frame = +1
Query: 64 LWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYD--VAKGISQGLADATIIA 237
L DKY AQY + + D+S V+ + + A + Y + + +++ D T IA
Sbjct: 1437 LLDKYVAQYAAILVHRNDLSRVLAVLERYGASANPANFSIYKLLMEETLAKPRFDYTEIA 1496
Query: 238 RVNNELWDLDRPLEGDCKLELLRWDNT--DAQAVFWHSSAHMLGEAMERVYGGCLCYGPP 411
RV N D+ L+ + + + ++ +G+++ V CL
Sbjct: 1497 RVRNVHLDVYNALQKESSEHFEEFSRALWALHLIAMRTALEEIGDSVPEVQKLCLKQSLS 1556
Query: 412 I---EEGFYYDMYYPEKGISSTDF-NVLEGLIKKIAKEKQPFERLELTKEQLLEMFDYNP 579
+ + D + E G ++ D+ + E L + + ++ +E E+ DY+P
Sbjct: 1557 LLRYTDILVADRIFYEAGAAAKDYGSEYESLGFLLLNHY--LDLVDAIEEGNGELVDYSP 1614
Query: 580 FKVRILNEKVQTPT 621
F+ + +V PT
Sbjct: 1615 FENSDIPTEVSLPT 1628
>U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family
protein 11 protein.
Length = 322
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Frame = +1
Query: 523 FERLELTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVR-------H 681
F+++ +T + E D N V +L + P T+Y L+ R PH + H
Sbjct: 108 FDQIRITNRKSKE--DGNASYVHLLTQHRYIPVLTIYEGDQLVHTARIPHSQFISVTAYH 165
Query: 682 TGKVKALKVTKN 717
G++ LK N
Sbjct: 166 KGELNTLKTNNN 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.135 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,834
Number of Sequences: 27780
Number of extensions: 348084
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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