Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30706
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   4.3  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   5.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.5  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   7.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.5  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 224 AREQHPASCRRPASNKTSCGLMPFHVTLYGSPPLGGFP 111
           A +  P SC      +   G+ P H   YG PP GG P
Sbjct: 42  AVQPDPGSCDPSVGLRQ--GIPPHH---YGGPPSGGQP 74


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 290 SGLSAARAPPHCRSASALWATAAREQH 210
           +GLS       C  A+ALW     E H
Sbjct: 46  TGLSLPACRLFCSEAAALWPKPTGEVH 72


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 500 HPRDITPPPEAMSPRRER 553
           H  DI P PE   P R R
Sbjct: 113 HNPDIYPDPEKFDPERFR 130


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 173 SCGLMPFHVTLYGSP 129
           S  ++P+H++ YG P
Sbjct: 283 SMNIVPYHMSPYGHP 297


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 173 SCGLMPFHVTLYGSP 129
           S  ++P+H++ YG P
Sbjct: 283 SMNIVPYHMSPYGHP 297


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 173 SCGLMPFHVTLYGSP 129
           S  ++P+H++ YG P
Sbjct: 283 SMNIVPYHMSPYGHP 297


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 173 SCGLMPFHVTLYGSP 129
           S  ++P+H++ YG P
Sbjct: 239 SMNIVPYHMSPYGHP 253


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 173 SCGLMPFHVTLYGSP 129
           S  ++P+H++ YG P
Sbjct: 283 SMNIVPYHMSPYGHP 297


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 173 SCGLMPFHVTLYGSP 129
           S  ++P+H++ YG P
Sbjct: 71  SMNIVPYHMSPYGHP 85


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 173 SCGLMPFHVTLYGSP 129
           S  ++P+H++ YG P
Sbjct: 283 SMNIVPYHMSPYGHP 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,736
Number of Sequences: 336
Number of extensions: 2159
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)