Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30706
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   4.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.5  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   6.0  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   6.0  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.9  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.9  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 248 PSGSAVARAPPTTRFQRHAQPRVSEL 325
           PS S +A APP+ R  R   PR + L
Sbjct: 683 PSASNMANAPPSVRNNRVLNPRGASL 708


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 35  ANSDKIIKSLLFGSRLYFTEITMPRLEN 118
           A   + + S+LFG RLY + I +  LEN
Sbjct: 81  AKQSESLGSVLFGDRLYNSPIEIKMLEN 108


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 194 AGMTPDVAREPQSPTARRPSGSAVARAPPTT 286
           AG T      P +    RP  +AV R  PT+
Sbjct: 34  AGQTKPATTRPMAEARARPGATAVPRRSPTS 64


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 266 PPHCRSASALWATAA--REQHPASCRRPASNKTSCGLMPFHVTLYGSPPL 123
           PP+ + AS L    A  +E + AS ++P+S  T   +  +    Y  PPL
Sbjct: 39  PPYPKVASKLKGVVAGGKENNIASFQKPSSKATRPYIPSYTRLTYSVPPL 88


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 251 SASALWATAAREQHPASCRRPASNKTSCGLMPFHVTLYGSPPLGGFPGAASLSP 90
           SAS L      +  P   RRP  +  + G      ++  S  LGG PG  + +P
Sbjct: 161 SASILQMNTTLDDIPILLRRPGLSSYTPGPSTSRRSISSSSNLGGNPGLIANNP 214


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 209 DVAREPQSPTARRPSGSAVARAPPTTRFQRH 301
           D     QSPT+  PS      +P T   Q H
Sbjct: 91  DSGNSSQSPTSPHPSNQPAMLSPSTAASQHH 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,214
Number of Sequences: 5004
Number of extensions: 32965
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)