Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30706
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61770.3 68418.m07752 brix domain-containing protein contains...    30   0.96 
At5g61770.2 68418.m07751 brix domain-containing protein contains...    30   0.96 
At5g61770.1 68418.m07750 brix domain-containing protein contains...    30   0.96 
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    29   2.9  
At3g07195.1 68416.m00858 proline-rich family protein                   29   2.9  
At4g39680.1 68417.m05614 SAP domain-containing protein contains ...    27   6.8  
At5g23210.2 68418.m02715 serine carboxypeptidase S10 family prot...    27   9.0  
At5g23210.1 68418.m02714 serine carboxypeptidase S10 family prot...    27   9.0  

>At5g61770.3 68418.m07752 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 346

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +2

Query: 26  LKCANSDKIIKSLLFGSRLYFTEITMPRLENPPTEDFRRVLREKALSHSLFYLKLGAGMT 205
           +K A   K ++  L    L +T +++   +     DF  V     ++H L   K  + ++
Sbjct: 42  MKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLS 101

Query: 206 PDVAREPQSPT 238
             VAR PQ PT
Sbjct: 102 LRVARTPQGPT 112


>At5g61770.2 68418.m07751 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 346

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +2

Query: 26  LKCANSDKIIKSLLFGSRLYFTEITMPRLENPPTEDFRRVLREKALSHSLFYLKLGAGMT 205
           +K A   K ++  L    L +T +++   +     DF  V     ++H L   K  + ++
Sbjct: 42  MKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLS 101

Query: 206 PDVAREPQSPT 238
             VAR PQ PT
Sbjct: 102 LRVARTPQGPT 112


>At5g61770.1 68418.m07750 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 345

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +2

Query: 26  LKCANSDKIIKSLLFGSRLYFTEITMPRLENPPTEDFRRVLREKALSHSLFYLKLGAGMT 205
           +K A   K ++  L    L +T +++   +     DF  V     ++H L   K  + ++
Sbjct: 42  MKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLS 101

Query: 206 PDVAREPQSPT 238
             VAR PQ PT
Sbjct: 102 LRVARTPQGPT 112


>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 297 RWKRVVGGARATALPLGLRAVGDCGSRATSGVMPAPSFK 181
           RW +V G A A+   L   AVGD G+    G++ A   K
Sbjct: 150 RWSKVPGAAEASIRNLPPSAVGDSGNFDAMGLLAASKGK 188


>At3g07195.1 68416.m00858 proline-rich family protein
          Length = 225

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 206 PDVAREPQSPTARRPSGSAVARAPPTTRFQRHAQPRVSEL 325
           P  AR  Q P A +P      RAPP T   R   P   +L
Sbjct: 54  PQPARRIQKPEAPKPVKQDTPRAPPPTEKNRVKAPPADQL 93


>At4g39680.1 68417.m05614 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 633

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 185 KLGAGMTPDVAREPQSPTARRPSGSAVARAPPTTRFQRHAQPRVSELLRRFEPAPM 352
           KL A + P    +PQ+ T  RP  +A+   PP  +      P V E L    P P+
Sbjct: 538 KLEAPLPPQPQHQPQAQTLSRPPPTALPPPPPLAK-----PPHVVERLPLPPPPPI 588


>At5g23210.2 68418.m02715 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 403

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 116 NPPTEDFRRVLREKALSHSLFYLKLGAGMTP 208
           N P   FR +LR + +SH+  + ++ AG  P
Sbjct: 224 NRPLPAFRSILRPRLISHNEGWRRMAAGYDP 254


>At5g23210.1 68418.m02714 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 363

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 116 NPPTEDFRRVLREKALSHSLFYLKLGAGMTP 208
           N P   FR +LR + +SH+  + ++ AG  P
Sbjct: 224 NRPLPAFRSILRPRLISHNEGWRRMAAGYDP 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,305
Number of Sequences: 28952
Number of extensions: 198168
Number of successful extensions: 714
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)