Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30705
         (737 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico...    48   2e-04
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    36   1.4  
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    34   3.2  
UniRef50_A2E1J4 Cluster: Putative uncharacterized protein; n=1; ...    34   4.2  
UniRef50_UPI0000E82155 Cluster: PREDICTED: similar to olfactory ...    33   5.5  
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    33   7.3  
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli...    33   9.7  

>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
           eudicotyledons|Rep: Polyprotein, putative - Solanum
           demissum (Wild potato)
          Length = 868

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  KRCMEMVVQG-RGGRGRPKKTWMECVNDDMRERERGVSAEMTADRRELNRKIRCAD 247
           +RC  MVV+G R GRGRPKK W E +  D+      ++ +MT DR+E   +I+  D
Sbjct: 638 RRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLH--ITEDMTLDRKEWRSRIKVED 691


>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +2

Query: 119 GRGRPKKTWMECVNDDMRERERGVSAEMTADRRELNRKIRCADPT 253
           GRGRPKKT  E +  D+     G+   M  DR    + I  ADPT
Sbjct: 335 GRGRPKKTIREVIKKDL--EINGLDRSMVLDRTLWRKLIHVADPT 377


>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 83   KRCMEMVVQGRGGRGRPKKTWMECVNDDMRER 178
            K  +E  V G   RGRP K W++C+++D + R
Sbjct: 963  KIAVEGKVTGNRPRGRPPKRWLDCISEDCKAR 994


>UniRef50_A2E1J4 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 2215

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 299  RSYFERK-SV---ILGLRVFGGTTLYTWAETYLCCISFATTLL 415
            R YF RK SV   I GL      TL+ W  T LCC+S   T+L
Sbjct: 2129 RGYFIRKVSVMFPICGLAFDSDQTLWVWGSTQLCCLSLNGTML 2171


>UniRef50_UPI0000E82155 Cluster: PREDICTED: similar to olfactory
           receptor 19; n=1; Gallus gallus|Rep: PREDICTED: similar
           to olfactory receptor 19 - Gallus gallus
          Length = 237

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 261 LSYVGSAQRIFLFNSLLSAVISALTPLSLSLISSFTHSIHVFFGRPLPPLPCTTISIH 88
           +SY G A ++F F+ L SA  S LT +S     +    +H  +G  L    C T+  H
Sbjct: 57  ISYAGCAAQVFFFSFLFSAEYSLLTVMSYDRYVAICKPLH--YGTLLGSRACATMGRH 112


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=2;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 958

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 104  VQGRGGRGRPKKTWMECVNDDMRERERGVSAEMTADRRELNRKI 235
            + G+  RGRP K W +C+  D + R+  V +   A R   +RK+
Sbjct: 883  IHGKRPRGRPAKRWTDCIKADCKNRQ--VDSLTKATRLTEDRKV 924


>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
           Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to fibropellin Ia - Strongylocentrotus
           purpuratus
          Length = 1096

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 104 VQGRGGRGRPKKTWMECVNDDMRERERGVSAEMTADRRELNRKI 235
           V G+  RGRP K W +C+  D   R+  V +   A R   +RK+
Sbjct: 22  VHGKHPRGRPAKRWTDCIKADCNNRQ--VDSLTKATRLTEDRKV 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,710,039
Number of Sequences: 1657284
Number of extensions: 12589152
Number of successful extensions: 33452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33431
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)