Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30705
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   6.4  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   8.5  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   8.5  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 402 PPHFYHHKHIETANELQLVFITYKLKAFS 488
           P + +HH  I  A+ + LVF+  K K ++
Sbjct: 309 PKYVFHHHKIHLADTIPLVFLDLKPKEYT 337


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 413 KVWWQKRYNRGKSLPKCIVWFPQKPSALKSRISAQNRNGQVQCQ 282
           K+ W K+ +  +   K I W  +     KS+ S  +  GQ++C+
Sbjct: 305 KIPWSKKGSVLEISTKSITWSRKARRISKSQTSVSSLEGQMKCE 348


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 375 RLTSVVSLLPPHFYHH 422
           R TS VSL+PP +Y H
Sbjct: 773 RATSAVSLVPPVYYAH 788


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 357 HYTLGQRLTSVVSLLPPHFYHHKHIETANEL 449
           HY   +R    VS+ P  F  H+ +E  N+L
Sbjct: 188 HYQANERGKHYVSMDPEIFNEHEELEVRNDL 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,267
Number of Sequences: 5004
Number of extensions: 53951
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)