Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30705
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268     28   6.7  
03_04_0174 - 18044516-18046327                                         28   8.9  
03_01_0240 - 1862699-1864186,1864245-1864442                           28   8.9  

>03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268
          Length = 574

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 305 YFERKSVILGLR--VFGGTTLYTWAETYLCCISFATTL 412
           + ER +V+   R  V  G   YTWAETY  C   A+ L
Sbjct: 32  FLERAAVVHPDRAAVVHGPVRYTWAETYRRCRRLASAL 69


>03_04_0174 - 18044516-18046327
          Length = 603

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 127 TSSPSTLHYHFHTSLSHIHFLFRFRSGSRF 38
           TSSPS+ H H HT   H H  +   S + +
Sbjct: 39  TSSPSSHHTHNHTYYHHSHSHYNNNSNTNY 68


>03_01_0240 - 1862699-1864186,1864245-1864442
          Length = 561

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 287 IEPVRSYFERKSVILGLR--VFGGTTLYTWAETYLCCISFATTL 412
           + PV S+ ER +V+ G R  V  G   Y+W ET   C++ A+ L
Sbjct: 14  LTPV-SFLERAAVVYGDRTAVVSGGREYSWRETRERCLAGASAL 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,114,416
Number of Sequences: 37544
Number of extensions: 335312
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)