Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30705
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 33 0.18
SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_35326| Best HMM Match : IPK (HMM E-Value=0) 29 3.0
SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 29 5.2
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 28 6.9
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 6.9
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_3037| Best HMM Match : Homeobox (HMM E-Value=4.3e-27) 28 9.1
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 95 EMVVQGRGGRGRPKKTWMECVNDDMRERERGVSAEMTADRRELNRKIRCA 244
+ +++G+ RGRP+K W E + +D+ + G++ T DR K+ A
Sbjct: 578 DFIIEGKRTRGRPRKNWHEVLREDL--KLAGLTPHDTQDRVRWKLKLNHA 625
>SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 VTKRCMEMVVQGRGGRGRPKKTWMECVNDDMRERERGV--SAEMTADRRELNRKIRCADP 250
+ K + GR GRPK TW + ++ E + + + M DRR+ R + P
Sbjct: 6 ILKVALRWTQPGRRKPGRPKTTWRRTILSELSEHQLTLAEAQHMARDRRKWKRFVAALCP 65
Query: 251 T*DK 262
T D+
Sbjct: 66 TGDE 69
>SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 VTKRCMEMVVQGRGGRGRPKKTWMECVNDDMRERERGV--SAEMTADRRELNRKIRCADP 250
++K + GR GRPK TW + ++ + + + + M DRR+ R + P
Sbjct: 6 ISKVALRWTPPGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHMARDRRKWKRFVAALCP 65
Query: 251 T*DK 262
T D+
Sbjct: 66 TGDE 69
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 VTKRCMEMVVQGRGGRGRPKKTWMECVNDDMRERERGV--SAEMTADRRELNRKIRCADP 250
+ K + GR GRPK TW + ++ + + + M DRR+ R + P
Sbjct: 61 IPKVALRWTPPGRRKPGRPKTTWRRTILSELSGHQLTLAEAQHMARDRRKWKRFVAALCP 120
Query: 251 T*DK 262
T D+
Sbjct: 121 TGDE 124
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 142 CFLRPTSSPSTL--HYHFHTSLSHIHFLFRFRSGSRFIREAATL 17
CF P+ L +YH H+ + ++ + R S F+R+A +L
Sbjct: 53 CFQACQDEPNCLSVNYHLHSQICEFNYEIKQRQASSFVRKALSL 96
>SB_35326| Best HMM Match : IPK (HMM E-Value=0)
Length = 598
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 167 MRERERGVSAEMTADRRELNRKIRCADPT*DKVEKK*KSDIEPVRSYFERKSV 325
+RE+ +GVSAE+ A R LNR+ K K K PV Y R+S+
Sbjct: 40 LREKNQGVSAEIKAHRNRLNRERVAKFRANKKSAPKDKDSKHPV--YKSRRSL 90
>SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 110 GRGGRGRPKKTWMECVNDDMRERERGVSAEMTADRR 217
GR +GRP+KTW + D+ + G+ A + ++R+
Sbjct: 76 GRRMKGRPRKTWADATLSDL--KTAGLKASVASNRK 109
>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 666
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 110 GRGGRGRPKKTWMECVNDDMRER--ERGVSAEMTADRRELNRKIRCADPT*DKVEK 271
G+ GRPK TW + ++ E G + ++ DR+E ++ PT + +K
Sbjct: 611 GKRKLGRPKTTWRRTIQAELLEMGLTWGKALKVAKDRQEWRHRVAALFPTREDGDK 666
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 77 VTKRCMEMVVQGRGGRGRPKKTWMECVNDDMRE 175
+T++ + QG+ RGRP+ TW ++ D ++
Sbjct: 426 ITRQSLTWNPQGKRKRGRPRNTWRRDLDADAKQ 458
>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 280
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 110 GRGGRGRPKKTWMECVNDDMRER--ERGVSAEMTADRRELNRKIRCADPT 253
G+ GRPK TW + ++ E G + ++ DR+E ++ PT
Sbjct: 225 GKRKPGRPKTTWRRTIQAELLEMGLTWGEALKVAKDRQEWRHRVAALFPT 274
>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 68 KMYVTKRCMEMVVQGRGGRGRPKKTWMECVNDDMRERERGVSAEMTADRRELNRKI 235
K+Y R E + G RG+P+ + +D+ +E +GV E LN I
Sbjct: 747 KIYKLTRPAEKTLVGTNERGKPQGRTNKEFSDEFQEPNKGVVREERTGSINLNNNI 802
>SB_3037| Best HMM Match : Homeobox (HMM E-Value=4.3e-27)
Length = 308
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Frame = -1
Query: 398 KRYNRGKSLPKCIVWFPQKPSALKSRISAQN------RNGQVQ--CQTSTFSPPY 258
K N G S P I W PS+ +S +A+N ++GQV+ C + PY
Sbjct: 242 KEENSGSSTPPTISWQAHAPSSTESNATAENSKPVISQSGQVEPWCLSPPVFKPY 296
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,081,015
Number of Sequences: 59808
Number of extensions: 396674
Number of successful extensions: 973
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -