Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30705
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.74 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 130 PTSSPSTLHYHFHT-SLSHIHF 68
           PT  P   H+H  T SL H+H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHLHY 366



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 354 PHYTLGQRLTSVVSLLPPHFYHHKHIETANEL 449
           PH+  G   T   ++ PPH +HH   ++   L
Sbjct: 334 PHHQHGNH-TMGPTMGPPHHHHHHQTQSLQHL 364


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 225 FNSLLSAVISALTPLSLSLISSFTHSIHVFFGRPLPPLPCTTISIHLLVTYI 70
           F ++L+  + + +   ++L  S   S+HVFF   +  +P T++ + LL  Y+
Sbjct: 260 FLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 192 LTPLSLSLISSFTHSIHVFFGRPLPPLPCTT 100
           L+P SL+  + F  S  +  G PLPPLP  T
Sbjct: 419 LSPSSLADGARFGGSC-LIHGPPLPPLPLHT 448


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 225 FNSLLSAVISALTPLSLSLISSFTHSIHVFFGRPLPPLPCTTISIHLLVTYI 70
           F ++L+  + + +   ++L  S   S+HVFF   +  +P T++ + LL  Y+
Sbjct: 260 FLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 192 LTPLSLSLISSFTHSIHVFFGRPLPPLPCTT 100
           L+P SL+  + F  S  +  G PLPPLP  T
Sbjct: 419 LSPSSLADGARFGGSC-LIHGPPLPPLPLHT 448


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 619 IHFQSSHRLFDSSLYYIIVN 678
           IH  ++++ ++  LYY I+N
Sbjct: 323 IHNNNNYKNYNKKLYYNIIN 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,406
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)