BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30702 (804 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 31 0.81 02_05_1175 - 34706870-34707616 31 1.4 03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368... 29 3.3 10_08_0379 - 17373533-17374147 29 4.3 06_01_0364 + 2591861-2593285 28 7.6 05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 28 10.0 01_06_1179 - 35161229-35162368 28 10.0 >04_04_1237 - 31991817-31992569,31993452-31993550,31994343-31994976, 31995329-31995585 Length = 580 Score = 31.5 bits (68), Expect = 0.81 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -3 Query: 433 RAPRVQLDARPAAGAGVQGRHVPRGPRLQHSERYCPPPSRG 311 R R + + AA AG Q V +GPR + CPPP RG Sbjct: 407 RRRRRRRPSAAAAAAGEQEGKVRQGPRGVQEQVPCPPPRRG 447 >02_05_1175 - 34706870-34707616 Length = 248 Score = 30.7 bits (66), Expect = 1.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 702 HTPIHVFFGRPLPPIPC 752 HTP+ F+G P PP PC Sbjct: 129 HTPVCPFYGHPNPPAPC 145 >03_06_0156 + 32035503-32035769,32036436-32036539,32036734-32036844, 32036923-32037073,32037614-32037888,32037998-32038211 Length = 373 Score = 29.5 bits (63), Expect = 3.3 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = -3 Query: 427 PRVQLDARPAAGAGV----QGRHVPRGPRLQHSERYCPPPSRGAGRCLRIYTCLV 275 P L RPAA A +G PRG R+ H + PP +R A + L I +V Sbjct: 3 PSPGLQRRPAAAAAAAVRGEGAEPPRGQRVLHGDIDPPPRARPAVQKLAIAAIVV 57 >10_08_0379 - 17373533-17374147 Length = 204 Score = 29.1 bits (62), Expect = 4.3 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = +3 Query: 702 HTPIHVFFGRPLPPIPC 752 H P FFG P PP PC Sbjct: 89 HAPACPFFGHPAPPAPC 105 >06_01_0364 + 2591861-2593285 Length = 474 Score = 28.3 bits (60), Expect = 7.6 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +2 Query: 320 GRGTVTLAVLQPGPPGDMSALHAGTRRWARV 412 GR A + P P GD S AGTR W R+ Sbjct: 410 GRLGSASATVVPSPAGDGSWFFAGTRLWPRL 440 >05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 Length = 819 Score = 27.9 bits (59), Expect = 10.0 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +2 Query: 656 ISRHLNAPLSLISSFTHSHPRFLRSTSSPYT-LHYHFHTSPSHMNLLS 796 + RHL A + SH LRS S+ + L H H SH++LLS Sbjct: 88 LRRHLRAEVLRRHPLLLSHLLSLRSASASLSSLPSHLHLLSSHLSLLS 135 >01_06_1179 - 35161229-35162368 Length = 379 Score = 27.9 bits (59), Expect = 10.0 Identities = 13/38 (34%), Positives = 16/38 (42%) Frame = -1 Query: 474 SKAVRPPVSVACTCGRRACSLTRAQRRVPACRADMSPG 361 S + PVS C CGR+ + P CR D G Sbjct: 130 SSVLSSPVSTGCRCGRKPELVVVEAPDTPPCRRDKFVG 167 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,030,719 Number of Sequences: 37544 Number of extensions: 593735 Number of successful extensions: 2220 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2089 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2218 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2185924824 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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