Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30702
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949...    31   0.81 
02_05_1175 - 34706870-34707616                                         31   1.4  
03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368...    29   3.3  
10_08_0379 - 17373533-17374147                                         29   4.3  
06_01_0364 + 2591861-2593285                                           28   7.6  
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635     28   10.0 
01_06_1179 - 35161229-35162368                                         28   10.0 

>04_04_1237 -
           31991817-31992569,31993452-31993550,31994343-31994976,
           31995329-31995585
          Length = 580

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 433 RAPRVQLDARPAAGAGVQGRHVPRGPRLQHSERYCPPPSRG 311
           R  R +  +  AA AG Q   V +GPR    +  CPPP RG
Sbjct: 407 RRRRRRRPSAAAAAAGEQEGKVRQGPRGVQEQVPCPPPRRG 447


>02_05_1175 - 34706870-34707616
          Length = 248

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 702 HTPIHVFFGRPLPPIPC 752
           HTP+  F+G P PP PC
Sbjct: 129 HTPVCPFYGHPNPPAPC 145


>03_06_0156 +
           32035503-32035769,32036436-32036539,32036734-32036844,
           32036923-32037073,32037614-32037888,32037998-32038211
          Length = 373

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 427 PRVQLDARPAAGAGV----QGRHVPRGPRLQHSERYCPPPSRGAGRCLRIYTCLV 275
           P   L  RPAA A      +G   PRG R+ H +   PP +R A + L I   +V
Sbjct: 3   PSPGLQRRPAAAAAAAVRGEGAEPPRGQRVLHGDIDPPPRARPAVQKLAIAAIVV 57


>10_08_0379 - 17373533-17374147
          Length = 204

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 702 HTPIHVFFGRPLPPIPC 752
           H P   FFG P PP PC
Sbjct: 89  HAPACPFFGHPAPPAPC 105


>06_01_0364 + 2591861-2593285
          Length = 474

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 320 GRGTVTLAVLQPGPPGDMSALHAGTRRWARV 412
           GR     A + P P GD S   AGTR W R+
Sbjct: 410 GRLGSASATVVPSPAGDGSWFFAGTRLWPRL 440


>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
          Length = 819

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 656 ISRHLNAPLSLISSFTHSHPRFLRSTSSPYT-LHYHFHTSPSHMNLLS 796
           + RHL A +        SH   LRS S+  + L  H H   SH++LLS
Sbjct: 88  LRRHLRAEVLRRHPLLLSHLLSLRSASASLSSLPSHLHLLSSHLSLLS 135


>01_06_1179 - 35161229-35162368
          Length = 379

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 474 SKAVRPPVSVACTCGRRACSLTRAQRRVPACRADMSPG 361
           S  +  PVS  C CGR+   +       P CR D   G
Sbjct: 130 SSVLSSPVSTGCRCGRKPELVVVEAPDTPPCRRDKFVG 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,030,719
Number of Sequences: 37544
Number of extensions: 593735
Number of successful extensions: 2220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2218
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)