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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30702
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)                     29   5.8  
SB_5537| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 178 NSSSNISAR*SYQQSPPQAPGHSGASRERRLPAQGTCIFSNTCRPLVRAGDSNAR 342
           +SS + S+  S  QS P +   SG S    +P Q    F+NT RP+ R      R
Sbjct: 12  SSSGDPSSHSSQSQSVPSSMD-SGGSTAATVPTQDMVAFANTRRPIPRGAFGEVR 65


>SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +1

Query: 178 NSSSNISAR*SYQQSPPQAPGHS-GASRERRLPAQGTCI---FSNTC-RPLVRAGD 330
           N+S  +S +      PP+ PG S    R+R+L    TCI   F N   RP+V   D
Sbjct: 220 NASPTMSCKGVLDHQPPKIPGQSIKEGRQRKLKPNETCIALRFINMAHRPVVITSD 275


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 403 PAAGAGVQGRHVPRGPRLQHSERYCPPPSRGAG 305
           P    G   R  PRGP L    R  PPP R +G
Sbjct: 90  PYGRGGPPSRGPPRGPPLPGPPRRGPPPDRDSG 122


>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
          Length = 147

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 433 RAPRVQLDARPAAGAGVQGRHVPRGPRLQHS 341
           +AP+V   A+ AA A V   H+ +  RL+HS
Sbjct: 20  QAPKVTWSAQLAADAQVWANHIAKNGRLEHS 50


>SB_5537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 623 STLSH*VASA--SISRHLNAPLSLISSFTHSHPRFLRSTS 736
           ST  H V  A  S SRHL  PL+L S+  H  PR L STS
Sbjct: 450 STSRHLVPQALDSTSRHL-VPLALDSTSRHLVPRALDSTS 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,635,287
Number of Sequences: 59808
Number of extensions: 643578
Number of successful extensions: 3666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3663
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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