BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30702 (804 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9 SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4 SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8 SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25) 29 5.8 SB_5537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 >SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 314 Score = 30.3 bits (65), Expect = 1.9 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +1 Query: 178 NSSSNISAR*SYQQSPPQAPGHSGASRERRLPAQGTCIFSNTCRPLVRAGDSNAR 342 +SS + S+ S QS P + SG S +P Q F+NT RP+ R R Sbjct: 12 SSSGDPSSHSSQSQSVPSSMD-SGGSTAATVPTQDMVAFANTRRPIPRGAFGEVR 65 >SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 358 Score = 29.1 bits (62), Expect = 4.4 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Frame = +1 Query: 178 NSSSNISAR*SYQQSPPQAPGHS-GASRERRLPAQGTCI---FSNTC-RPLVRAGD 330 N+S +S + PP+ PG S R+R+L TCI F N RP+V D Sbjct: 220 NASPTMSCKGVLDHQPPKIPGQSIKEGRQRKLKPNETCIALRFINMAHRPVVITSD 275 >SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 414 Score = 28.7 bits (61), Expect = 5.8 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -3 Query: 403 PAAGAGVQGRHVPRGPRLQHSERYCPPPSRGAG 305 P G R PRGP L R PPP R +G Sbjct: 90 PYGRGGPPSRGPPRGPPLPGPPRRGPPPDRDSG 122 >SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25) Length = 147 Score = 28.7 bits (61), Expect = 5.8 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -3 Query: 433 RAPRVQLDARPAAGAGVQGRHVPRGPRLQHS 341 +AP+V A+ AA A V H+ + RL+HS Sbjct: 20 QAPKVTWSAQLAADAQVWANHIAKNGRLEHS 50 >SB_5537| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 496 Score = 28.3 bits (60), Expect = 7.7 Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +2 Query: 623 STLSH*VASA--SISRHLNAPLSLISSFTHSHPRFLRSTS 736 ST H V A S SRHL PL+L S+ H PR L STS Sbjct: 450 STSRHLVPQALDSTSRHL-VPLALDSTSRHLVPRALDSTS 488 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 27,635,287 Number of Sequences: 59808 Number of extensions: 643578 Number of successful extensions: 3666 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3663 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2227723674 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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