Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30702
(804 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 35 0.40
L32137-1|AAA57253.1| 757|Homo sapiens matrix protein protein. 34 0.52
AB086984-1|BAC53888.1| 757|Homo sapiens cartilage oligomeric ma... 34 0.52
S40369-1|AAB22591.1| 980|Homo sapiens glutamate receptor subuni... 33 1.6
AK223216-1|BAD96936.1| 757|Homo sapiens cartilage oligomeric ma... 32 2.1
AY398617-1|AAR32130.1| 607|Homo sapiens APG16L beta protein. 31 3.7
BC125092-1|AAI25093.1| 757|Homo sapiens cartilage oligomeric ma... 31 4.9
BC110847-1|AAI10848.1| 757|Homo sapiens cartilage oligomeric ma... 31 4.9
AC003107-1|AAB86501.1| 817|Homo sapiens COMP_HUMAN protein. 31 4.9
BC117337-1|AAI17338.1| 523|Homo sapiens ATG16L1 protein protein. 31 6.4
BC068277-1|AAH68277.1| 607|Homo sapiens C2orf55 protein protein. 31 6.4
AY358182-1|AAQ88549.1| 470|Homo sapiens SSGL9393 protein. 31 6.4
AK123876-1|BAC85713.1| 428|Homo sapiens protein ( Homo sapiens ... 31 6.4
AK000897-1|BAA91413.1| 309|Homo sapiens protein ( Homo sapiens ... 31 6.4
AC013726-3|AAY14860.1| 523|Homo sapiens unknown protein. 31 6.4
BC033513-1|AAH33513.1| 265|Homo sapiens Unknown (protein for IM... 30 8.5
AK128029-1|BAC87236.1| 167|Homo sapiens protein ( Homo sapiens ... 30 8.5
>AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix
receptor protein.
Length = 346
Score = 34.7 bits (76), Expect = 0.40
Identities = 26/64 (40%), Positives = 34/64 (53%)
Frame = +3
Query: 612 SSFPLPYPIRWLQLLSAVILTLLFLSYRPSHTPIHVFFGRPLPPIPCTTISIHLLVT*IS 791
S+FP P P+ L S + LFLS PS P+ +FF P PP PC + LL+ +
Sbjct: 237 SAFPTPRPLISLSASSHFLSLSLFLS--PS-LPVCLFF--PFPPFPCLLLP-SLLLPLLY 290
Query: 792 SLSP 803
LSP
Sbjct: 291 FLSP 294
>L32137-1|AAA57253.1| 757|Homo sapiens matrix protein protein.
Length = 757
Score = 34.3 bits (75), Expect = 0.52
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 339 SLCCSRGPRGTCRPCTPAPAAGRASSCTRGARRYTP 446
S+C + C PC P +AS C RGA+R+ P
Sbjct: 195 SVCINTRGSFQCGPCQPGFVGDQASGCQRGAQRFCP 230
>AB086984-1|BAC53888.1| 757|Homo sapiens cartilage oligomeric
matrix protein protein.
Length = 757
Score = 34.3 bits (75), Expect = 0.52
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 339 SLCCSRGPRGTCRPCTPAPAAGRASSCTRGARRYTP 446
S+C + C PC P +AS C RGA+R+ P
Sbjct: 195 SVCINTRGSFQCGPCQPGFVGDQASGCQRGAQRFCP 230
>S40369-1|AAB22591.1| 980|Homo sapiens glutamate receptor subunit
protein.
Length = 980
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -1
Query: 462 RPPVSVACTCGRRACSLTRAQRRVPACRADMSPGGPGCSTASVTVPRPHEGPAG 301
RP CT R C R + + A A P G G + + PRP GPAG
Sbjct: 920 RPAAPTPCT-HVRVCQECRRIQALRASGAGAPPRGLGVPAEATSPPRPRPGPAG 972
>AK223216-1|BAD96936.1| 757|Homo sapiens cartilage oligomeric
matrix protein precursor variant protein.
Length = 757
Score = 32.3 bits (70), Expect = 2.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 339 SLCCSRGPRGTCRPCTPAPAAGRASSCTRGARRYTP 446
S+C S C PC P +AS C R A+R+ P
Sbjct: 195 SVCISTRGSFQCGPCQPGFVGDQASGCQRRAQRFCP 230
>AY398617-1|AAR32130.1| 607|Homo sapiens APG16L beta protein.
Length = 607
Score = 31.5 bits (68), Expect = 3.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 142 SSKVTHTLGCCLNSSSNISAR*SYQQSP-PQ--APGHSGASRERRLPAQGTCIF 294
+ +++ G L+S +NI R S P PQ H G+ +E R+PA C+F
Sbjct: 265 TKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDAHPGSGKEVRVPATALCVF 318
>BC125092-1|AAI25093.1| 757|Homo sapiens cartilage oligomeric
matrix protein protein.
Length = 757
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 339 SLCCSRGPRGTCRPCTPAPAAGRASSCTRGARRYTP 446
S+C + C PC P +AS C R A+R+ P
Sbjct: 195 SVCINTRGSFQCGPCQPGFVGDQASGCQRRAQRFCP 230
>BC110847-1|AAI10848.1| 757|Homo sapiens cartilage oligomeric
matrix protein protein.
Length = 757
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 339 SLCCSRGPRGTCRPCTPAPAAGRASSCTRGARRYTP 446
S+C + C PC P +AS C R A+R+ P
Sbjct: 195 SVCINTRGSFQCGPCQPGFVGDQASGCQRRAQRFCP 230
>AC003107-1|AAB86501.1| 817|Homo sapiens COMP_HUMAN protein.
Length = 817
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 339 SLCCSRGPRGTCRPCTPAPAAGRASSCTRGARRYTP 446
S+C + C PC P +AS C R A+R+ P
Sbjct: 195 SVCINTRGSFQCGPCQPGFVGDQASGCQRRAQRFCP 230
>BC117337-1|AAI17338.1| 523|Homo sapiens ATG16L1 protein protein.
Length = 523
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 142 SSKVTHTLGCCLNSSSNISAR*SYQQSP-PQ--APGHSGASRERRLPAQGTCIF 294
+ +++ G L+S +NI R S P PQ H G+ +E R+PA C+F
Sbjct: 181 TKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVF 234
>BC068277-1|AAH68277.1| 607|Homo sapiens C2orf55 protein protein.
Length = 607
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 480 NVSKAVRPPVSVACTCGRRACSLTRAQRRVPA-CRADMSPGG 358
+ + A PP +C R A R RRVPA CR +SPGG
Sbjct: 478 STAPAPSPPAPKSCLKHRPA-GRQRGHRRVPAACRCGVSPGG 518
>AY358182-1|AAQ88549.1| 470|Homo sapiens SSGL9393 protein.
Length = 470
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 142 SSKVTHTLGCCLNSSSNISAR*SYQQSP-PQ--APGHSGASRERRLPAQGTCIF 294
+ +++ G L+S +NI R S P PQ H G+ +E R+PA C+F
Sbjct: 265 TKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVF 318
>AK123876-1|BAC85713.1| 428|Homo sapiens protein ( Homo sapiens
cDNA FLJ41882 fis, clone OCBBF2022351, weakly similar
to TIPD PROTEIN. ).
Length = 428
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 142 SSKVTHTLGCCLNSSSNISAR*SYQQSP-PQ--APGHSGASRERRLPAQGTCIF 294
+ +++ G L+S +NI R S P PQ H G+ +E R+PA C+F
Sbjct: 121 TKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVF 174
>AK000897-1|BAA91413.1| 309|Homo sapiens protein ( Homo sapiens
cDNA FLJ10035 fis, clone HEMBA1000919. ).
Length = 309
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 142 SSKVTHTLGCCLNSSSNISAR*SYQQSP-PQ--APGHSGASRERRLPAQGTCIF 294
+ +++ G L+S +NI R S P PQ H G+ +E R+PA C+F
Sbjct: 169 TKRLSQPAGGLLDSVTNIFGRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVF 222
>AC013726-3|AAY14860.1| 523|Homo sapiens unknown protein.
Length = 523
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 142 SSKVTHTLGCCLNSSSNISAR*SYQQSP-PQ--APGHSGASRERRLPAQGTCIF 294
+ +++ G L+S +NI R S P PQ H G+ +E R+PA C+F
Sbjct: 181 TKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVF 234
>BC033513-1|AAH33513.1| 265|Homo sapiens Unknown (protein for
IMAGE:5172161) protein.
Length = 265
Score = 30.3 bits (65), Expect = 8.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +3
Query: 306 PAPREGGGQ*RSLCCSR--GPRGTCRPCTPAPAAG-RASSCTRGARRYTPH*QGVGQPY 473
P P GGQ R+ R GP P +PAP G A C++ P + +PY
Sbjct: 154 PGPSAAGGQARASAARRRGGPTAAAPPGSPAPLRGMNADRCSQREAGRCPGAETTKRPY 212
>AK128029-1|BAC87236.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ46148 fis, clone TESTI4000600. ).
Length = 167
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 341 RALLSPALTRGRQVFENIHVPCAGRRRSRLAPLWPGAC 228
R SP T R + +H PC+ + R P WP +C
Sbjct: 22 RPAASPNTTSSRG--QTVHPPCSSKLRMDPTPAWPASC 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,335,188
Number of Sequences: 237096
Number of extensions: 3221045
Number of successful extensions: 10805
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10782
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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