Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30702
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42610.2 68415.m05274 expressed protein contains Pfam profile...    29   2.7  
At2g42610.1 68415.m05273 expressed protein contains Pfam profile...    29   2.7  
At4g33140.1 68417.m04721 expressed protein                             29   4.8  
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    29   4.8  
At1g64140.1 68414.m07266 expressed protein similar to putative d...    29   4.8  

>At2g42610.2 68415.m05274 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 177

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 702 HTPIHVFFGRPLPPIPCT 755
           H P  +F+G+P PP PCT
Sbjct: 74  HVPGCMFYGQPEPPAPCT 91


>At2g42610.1 68415.m05273 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 177

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 702 HTPIHVFFGRPLPPIPCT 755
           H P  +F+G+P PP PCT
Sbjct: 74  HVPGCMFYGQPEPPAPCT 91


>At4g33140.1 68417.m04721 expressed protein
          Length = 353

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 635 H*VASASISRHLNAPLSLISSFTHSHPRFLRSTSSPYTLHYHFHTSPSH 781
           H +A  S     ++  +L+SSFT   P FLRS  SP ++   FH   +H
Sbjct: 5   HSIAILSRIASFDSHKTLMSSFTD--PLFLRSLYSPRSIAIRFHGDFAH 51


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 495 SQSTRNVSKAVRPPVSVACTCGRRACSLTRAQRRVPA--CRADMSP-GGPGCSTASV 334
           SQ ++N  + +R PV    T GRR C L+   + +P+  C    S  GGP  ++  +
Sbjct: 150 SQYSQNPHRVIRGPVF---TVGRRGCDLSIRDQAMPSTLCELKQSEHGGPSVASLEI 203


>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 321 GGGQ*RSLCCSRGPRGTCRPCTPAPAAGRA--SSCTRGARRYTPH*QGVG 464
           GG + +S  C++G +G+   C       R   S CT+GA   TP  +G G
Sbjct: 380 GGRRCQSNGCTKGAQGSTMFCKAHGGGKRCTHSGCTKGAEGSTPFCKGHG 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,631,182
Number of Sequences: 28952
Number of extensions: 410377
Number of successful extensions: 1145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)