Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30700
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    27   2.6  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    27   2.6  
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   5.9  

>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +1

Query: 448 TSRTRPLRWAFKINIIIYCHY 510
           T R++P +++++  I++Y HY
Sbjct: 205 TKRSKPFKYSYEKEIVLYAHY 225


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 439 LKTTSRTRPLRWAFKINIIIYCHYYYGVQHSYKY 540
           L T +  RP+R  F   I+I C  Y  +Q+   Y
Sbjct: 261 LVTPALMRPIRMLFTQPIVILCSTYMAIQYGILY 294


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 50  SYCSNNTYEYMDVTYSIICPQ 112
           +YC +  YEYM  TY+ + P+
Sbjct: 152 TYCESRIYEYMVPTYAFVPPK 172


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 466 LRWAFKINIIIYCHYYYGVQHSYKY 540
           LR    I + I C++ YG+ HSY++
Sbjct: 226 LRMQLSILVGIICNFAYGLLHSYRW 250


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 88  DVHILVGIVRTITRQTLYYFIDYATYL 8
           DVH+L+ +V T+  Q  +  +D+ T L
Sbjct: 616 DVHVLLSLVSTLENQVNFPQVDFTTPL 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,385
Number of Sequences: 5004
Number of extensions: 52646
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)