Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30700
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83318-5|CAE54897.1|  203|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical
           protein R05F9.7 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 472 WAFKINIIIYCHYYYGVQHS 531
           WA   NI++ C YYY VQ S
Sbjct: 198 WAVFSNIVLMCLYYYNVQES 217


>Z83318-5|CAE54897.1|  203|Caenorhabditis elegans Hypothetical
           protein F55B11.5 protein.
          Length = 203

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 187 HRSFNCLTYHYRYSRNV 137
           HR F CL  HYRY R+V
Sbjct: 11  HRIFMCLLLHYRYIRSV 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,836
Number of Sequences: 27780
Number of extensions: 281953
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)