Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30697
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853... 28 2.2
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151... 27 3.9
03_03_0041 - 14007687-14009381 27 3.9
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 27 5.1
07_03_1010 - 23276442-23276681,23277022-23277267 26 6.7
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 26 6.7
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 26 8.9
04_04_0941 - 29544252-29544355,29545155-29545299,29545637-295457... 26 8.9
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 26 8.9
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 26 8.9
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600... 26 8.9
>07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,
8530533-8530878,8530964-8531101,8531197-8531322,
8531422-8531634,8531721-8531863,8531891-8532009,
8532099-8532295,8532379-8532729,8532811-8533395
Length = 1143
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 84 WFLTKFVTTFLPNLFEMRVNGVII 13
WF++ F+ F+ + EMR +GV I
Sbjct: 957 WFMSLFICIFVTGILEMRWSGVAI 980
>03_06_0259 +
32712976-32714335,32714454-32714587,32714904-32715144,
32715254-32715462,32715522-32715583,32715690-32715801,
32715916-32716208,32716400-32716520
Length = 843
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 47 LGRNVVTNFV-RNHSNGGIPGENLPFDIHNR 136
LGR VVT + RN GG+PGE F + R
Sbjct: 244 LGRKVVTVVLSRNRFTGGLPGEITSFYLLER 274
>03_03_0041 - 14007687-14009381
Length = 564
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 136 LQADIVFHPICGLWTISTLSHHPSPA 213
L D++FHP C T+S L P P+
Sbjct: 59 LPGDLLFHPACVRLTLSHLLPSPDPS 84
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 84 WFLTKFVTTFLPNLFEMRVNGV 19
WF++ F++ F + EMR +GV
Sbjct: 901 WFISLFISIFATGILEMRWSGV 922
>07_03_1010 - 23276442-23276681,23277022-23277267
Length = 161
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 175 WTISTLSHHPSPAFEE 222
W I T+ H PSPA +E
Sbjct: 122 WIIKTMKHEPSPAQDE 137
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 175 WTISTLSHHPSPAFEE 222
W I T+ H PSPA +E
Sbjct: 156 WIIKTMKHEPSPAQDE 171
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 84 WFLTKFVTTFLPNLFEMRVNGV 19
WF++ F+ F + EMR +GV
Sbjct: 930 WFMSLFICIFATGILEMRWSGV 951
>04_04_0941 -
29544252-29544355,29545155-29545299,29545637-29545775,
29545836-29545893,29546012-29546123,29546311-29546484,
29547276-29547450,29547531-29547589,29548008-29548109,
29548178-29548212,29549017-29549111,29549638-29549686,
29549754-29549812,29549978-29550051,29550204-29550296,
29550389-29550769
Length = 617
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 172 LWTISTLSHHPSPA 213
LW I TL HH SPA
Sbjct: 473 LWEIDTLRHHYSPA 486
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 84 WFLTKFVTTFLPNLFEMRVNGV 19
WF++ F+ F + EMR +GV
Sbjct: 906 WFMSLFICIFATGILEMRWSGV 927
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 84 WFLTKFVTTFLPNLFEMRVNGV 19
WF++ F++ F + EMR +GV
Sbjct: 887 WFISLFLSIFATGILEMRWSGV 908
>01_06_1642 +
38857326-38857581,38858577-38858818,38859001-38860004,
38860170-38860587,38860673-38860789
Length = 678
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 38 SNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKL 145
S+KL R++ + NH + G+P D + +Y +
Sbjct: 115 SSKLPRSIFYDLRGNHDSFGVPSPGGDHDFYQKYSI 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,370,894
Number of Sequences: 37544
Number of extensions: 159321
Number of successful extensions: 353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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