Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30697
         (342 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VI...    59   4e-09
X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc ...    54   1e-07
BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase su...    54   1e-07
BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase su...    54   1e-07
BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase su...    54   1e-07
AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase su...    54   1e-07
BC002810-1|AAH02810.1|  554|Homo sapiens zinc finger protein 205...    28   6.6  
AF060865-1|AAC70007.1|  504|Homo sapiens zinc finger protein ZNF...    28   6.6  
BC067748-1|AAH67748.1|  264|Homo sapiens zinc finger protein 524...    28   8.7  
BC014666-1|AAH14666.1|  264|Homo sapiens zinc finger protein 524...    28   8.7  
BC007396-1|AAH07396.2|  260|Homo sapiens ZNF524 protein protein.       28   8.7  
AK094301-1|BAC04327.1|  351|Homo sapiens protein ( Homo sapiens ...    28   8.7  

>AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VIIc
           protein.
          Length = 63

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = +2

Query: 53  RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 223
           R   T+ VR +H   G PG+NLPF + N+++L     +Y GSG +AP+ I RHQLLKK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWRLLAMMTVYFGSGFAAPFFIVRHQLLKK 63


>X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc
           gene for subunit VIIc of cytochrome c oxidase (EC
           1.9.3.1).  ).
          Length = 63

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 220
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 220
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 220
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 220
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc precursor protein.
          Length = 63

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 220
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC002810-1|AAH02810.1|  554|Homo sapiens zinc finger protein 205
           protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 140 CNGCECRRVDSRQEYRR*NGFSRNSLPHFCPICLRC 33
           C+ C  +R   R +     G    + PH CPIC +C
Sbjct: 394 CDRC-AKRFTRRSDLVTHQGTHTGAKPHKCPICAKC 428


>AF060865-1|AAC70007.1|  504|Homo sapiens zinc finger protein ZNF210
           protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 140 CNGCECRRVDSRQEYRR*NGFSRNSLPHFCPICLRC 33
           C+ C  +R   R +     G    + PH CPIC +C
Sbjct: 344 CDRC-AKRFTRRSDLVTHQGTHTGAKPHKCPICAKC 378


>BC067748-1|AAH67748.1|  264|Homo sapiens zinc finger protein 524
           protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 83  GFSRNSLPHFCPICLR 36
           G      PHFCP+CLR
Sbjct: 106 GSGPRKAPHFCPVCLR 121


>BC014666-1|AAH14666.1|  264|Homo sapiens zinc finger protein 524
           protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 83  GFSRNSLPHFCPICLR 36
           G      PHFCP+CLR
Sbjct: 106 GSGPRKAPHFCPVCLR 121


>BC007396-1|AAH07396.2|  260|Homo sapiens ZNF524 protein protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 83  GFSRNSLPHFCPICLR 36
           G      PHFCP+CLR
Sbjct: 102 GSGPRKAPHFCPVCLR 117


>AK094301-1|BAC04327.1|  351|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36982 fis, clone BRACE2006488, highly similar to
           POLY(RC) BINDING PROTEIN 2. ).
          Length = 351

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 178 TISTLSHHPSPAF 216
           T+STLSHHP P F
Sbjct: 17  TLSTLSHHPQPQF 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,409,397
Number of Sequences: 237096
Number of extensions: 886295
Number of successful extensions: 1716
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)