Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30694
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25554| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.097
SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) 30 1.6
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 29 4.8
SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_25554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 34.3 bits (75), Expect = 0.097
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 515 LDWAAFAVMTLPSLAIPFGLWY 580
+DW F++M++P++ IPF +WY
Sbjct: 1 VDWGLFSLMSIPTMLIPFMVWY 22
>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 30.7 bits (66), Expect = 1.2
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = -2
Query: 411 ALYVTSAELKLK*PYLLDRTVTTWDTLV*---GAILSISAVSCPPTTVNTSGWKPLSTSF 241
+LYV L+ + P + D T ++ +V G +LSISAV+ P T + +SG + L
Sbjct: 101 SLYVLQDLLQGEPPIVQDVTFSSEYLVVLLQSGLVLSISAVT-PDTAILSSG-RELVVKH 158
Query: 240 TSTAGALPTLNNVYFTSISIFSTKYL 163
+A A+PT NN T ++ S ++
Sbjct: 159 QDSAIAMPTGNNTIKTVATVESGGFI 184
>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 523
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 382 VEIAVLIGPDSHYMGYISLRCNPIDFRGQLSAYYSKHVRMEAVVHE 245
VE+ VL G + Y G + + +P D +++ Y HV EA+V E
Sbjct: 54 VELPVLCGGEKVYTGNVKYQVSPFDHSNKIAKY---HVADEALVKE 96
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = -1
Query: 490 IIFEGYDGSLSWSTADRILDVCGVFAGFVCDFRRAEVEIAVLIGPDSHYMGYISLRCNPI 311
I +GY G+ + + ++ G++ G +CD RR + + G ++G +L C+
Sbjct: 396 ICLDGYTGADCSLSKALVPELFGIYDGGLCDIRRRPCKKTDIFG--DGFIGSENLTCHST 453
Query: 310 DFR 302
+F+
Sbjct: 454 EFK 456
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 257 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1437 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1467
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 257 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1459 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1489
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 257 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1481 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1511
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 257 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1503 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1533
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 257 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1525 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1555
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 257 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
R P L P+RS + T+ + L YPY LL I
Sbjct: 1591 RYPYALLTVPLRSTYDTLTLYLRYPYPLLTI 1621
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 257 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
R P L P+RS + T+ + L YPY+LL I
Sbjct: 1547 RYPYALLTIPLRSTYDTLTLNLRYPYALLTI 1577
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 257 RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
R P L P+RS + T+ + L YPY+LL +
Sbjct: 1569 RYPYALLTIPLRSTYGTLQLYLRYPYALLTV 1599
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +3
Query: 387 ARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRISSIGRHSQL*PSR 551
A+ ++ T PA+ P S+ + +Q+R P+ P+K SS + + + P++
Sbjct: 106 AQPRNPTSPAEKPHQSSKETQPVQQRNPAGPAKKPSRSSKETQPVQQRNPASPAK 160
>SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 535 CECRPIEDMRGELSIIIFEGYDGS---LSWSTADRILDVCGVF 416
C+ RP+ M S+++ E Y G+ L+ TAD ++D C F
Sbjct: 255 CKERPVPSMT---SVLVKESYTGAHQLLTQGTADVVIDTCSDF 294
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,891,905
Number of Sequences: 59808
Number of extensions: 434318
Number of successful extensions: 994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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