Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30691
         (681 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC098349-1|AAH98349.1|   83|Homo sapiens CDC42SE2 protein protein.     57   7e-08
BC096738-1|AAH96738.1|   84|Homo sapiens CDC42 small effector 2 ...    57   7e-08
BC096703-1|AAH96703.1|   84|Homo sapiens CDC42 small effector 2 ...    57   7e-08
AF189692-1|AAF87598.1|   84|Homo sapiens non-kinase Cdc42 effect...    57   7e-08
BC041604-1|AAH41604.1|   79|Homo sapiens CDC42 small effector 1 ...    41   0.005
BC012796-1|AAH12796.2|   79|Homo sapiens CDC42 small effector 1 ...    41   0.005
AL590133-24|CAI13349.1|   79|Homo sapiens CDC42 small effector 1...    41   0.005
AF286041-1|AAF97248.1|   77|Homo sapiens CDC42-binding protein S...    41   0.005
AF187845-1|AAF87597.1|   79|Homo sapiens small protein effector ...    41   0.005
BC052955-1|AAH52955.1|  505|Homo sapiens Wiskott-Aldrich syndrom...    31   5.0  
AM295156-1|CAL26602.1|  505|Homo sapiens WASL protein protein.         31   5.0  
AC006333-1|AAQ96857.1|  505|Homo sapiens unknown protein.              31   5.0  
D88460-1|BAA20128.1|  505|Homo sapiens N-WASP protein.                 30   6.6  

>BC098349-1|AAH98349.1|   83|Homo sapiens CDC42SE2 protein protein.
          Length = 83

 Score = 56.8 bits (131), Expect = 7e-08
 Identities = 31/63 (49%), Positives = 36/63 (57%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDIPASLLHSMQNQM 672
           E WL  F CC             IDRSMIG PTNF HT H+GS D+    + + S+QNQM
Sbjct: 2   EFWL-CFNCCIAEQPQPKRRRR-IDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM 59

Query: 673 QSK 681
           QSK
Sbjct: 60  QSK 62


>BC096738-1|AAH96738.1|   84|Homo sapiens CDC42 small effector 2
           protein.
          Length = 84

 Score = 56.8 bits (131), Expect = 7e-08
 Identities = 31/63 (49%), Positives = 36/63 (57%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDIPASLLHSMQNQM 672
           E WL  F CC             IDRSMIG PTNF HT H+GS D+    + + S+QNQM
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRRR-IDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM 60

Query: 673 QSK 681
           QSK
Sbjct: 61  QSK 63


>BC096703-1|AAH96703.1|   84|Homo sapiens CDC42 small effector 2
           protein.
          Length = 84

 Score = 56.8 bits (131), Expect = 7e-08
 Identities = 31/63 (49%), Positives = 36/63 (57%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDIPASLLHSMQNQM 672
           E WL  F CC             IDRSMIG PTNF HT H+GS D+    + + S+QNQM
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRRR-IDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM 60

Query: 673 QSK 681
           QSK
Sbjct: 61  QSK 63


>AF189692-1|AAF87598.1|   84|Homo sapiens non-kinase Cdc42 effector
           protein SPEC2 protein.
          Length = 84

 Score = 56.8 bits (131), Expect = 7e-08
 Identities = 31/63 (49%), Positives = 36/63 (57%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDIPASLLHSMQNQM 672
           E WL  F CC             IDRSMIG PTNF HT H+GS D+    + + S+QNQM
Sbjct: 3   EFWL-CFNCCIAEQPQPKRRRR-IDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM 60

Query: 673 QSK 681
           QSK
Sbjct: 61  QSK 63


>BC041604-1|AAH41604.1|   79|Homo sapiens CDC42 small effector 1
           protein.
          Length = 79

 Score = 40.7 bits (91), Expect = 0.005
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDI--PASLLHSMQN 666
           E W +   CC             IDR+MIG P NF H  HIGS ++      ++  ++Q 
Sbjct: 3   EFWHK-LGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQE 61

Query: 667 QMQSK 681
           QM+SK
Sbjct: 62  QMRSK 66


>BC012796-1|AAH12796.2|   79|Homo sapiens CDC42 small effector 1
           protein.
          Length = 79

 Score = 40.7 bits (91), Expect = 0.005
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDI--PASLLHSMQN 666
           E W +   CC             IDR+MIG P NF H  HIGS ++      ++  ++Q 
Sbjct: 3   EFWHK-LGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQE 61

Query: 667 QMQSK 681
           QM+SK
Sbjct: 62  QMRSK 66


>AL590133-24|CAI13349.1|   79|Homo sapiens CDC42 small effector 1
           protein.
          Length = 79

 Score = 40.7 bits (91), Expect = 0.005
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDI--PASLLHSMQN 666
           E W +   CC             IDR+MIG P NF H  HIGS ++      ++  ++Q 
Sbjct: 3   EFWHK-LGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQE 61

Query: 667 QMQSK 681
           QM+SK
Sbjct: 62  QMRSK 66


>AF286041-1|AAF97248.1|   77|Homo sapiens CDC42-binding protein
           SCIP1 protein.
          Length = 77

 Score = 40.7 bits (91), Expect = 0.005
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDI--PASLLHSMQN 666
           E W +   CC             IDR+MIG P NF H  HIGS ++      ++  ++Q 
Sbjct: 1   EFWHK-LGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQE 59

Query: 667 QMQSK 681
           QM+SK
Sbjct: 60  QMRSK 64


>AF187845-1|AAF87597.1|   79|Homo sapiens small protein effector 1
           of Cdc42 protein.
          Length = 79

 Score = 40.7 bits (91), Expect = 0.005
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 493 EIWLQWFACCYXXXXXXXXXXXXIDRSMIGAPTNFQHTGHIGSTDVDI--PASLLHSMQN 666
           E W +   CC             IDR+MIG P NF H  HIGS ++      ++  ++Q 
Sbjct: 3   EFWHK-LGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQE 61

Query: 667 QMQSK 681
           QM+SK
Sbjct: 62  QMRSK 66


>BC052955-1|AAH52955.1|  505|Homo sapiens Wiskott-Aldrich
           syndrome-like protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 562 IDRSMIGAPTNFQHTGHIG 618
           + ++ IG P+NFQH GH+G
Sbjct: 198 LTKADIGTPSNFQHIGHVG 216


>AM295156-1|CAL26602.1|  505|Homo sapiens WASL protein protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 562 IDRSMIGAPTNFQHTGHIG 618
           + ++ IG P+NFQH GH+G
Sbjct: 198 LTKADIGTPSNFQHIGHVG 216


>AC006333-1|AAQ96857.1|  505|Homo sapiens unknown protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 562 IDRSMIGAPTNFQHTGHIG 618
           + ++ IG P+NFQH GH+G
Sbjct: 198 LTKADIGTPSNFQHIGHVG 216


>D88460-1|BAA20128.1|  505|Homo sapiens N-WASP protein.
          Length = 505

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 577 IGAPTNFQHTGHIG 618
           IG P+NFQH GH+G
Sbjct: 203 IGTPSNFQHIGHVG 216


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,084,041
Number of Sequences: 237096
Number of extensions: 1738594
Number of successful extensions: 3249
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3249
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)